r5440 - /1.3/test_suite/system_tests/sequence.py -- April 08, 2008 - 15:53

Author: bugman
Date: Tue Apr  8 15:53:22 2008
New Revision: 5440

URL: http://svn.gna.org/viewcvs/relax?rev=5440&view=rev
Log:
Expanded the data structure testing in the system test for loading of a 
sequence from a PDB file.


Modified:
    1.3/test_suite/system_tests/sequence.py

Modified: 1.3/test_suite/system_tests/sequence.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/sequence.py?rev=5440&r1=5439&r2=5440&view=diff
==============================================================================
--- 1.3/test_suite/system_tests/sequence.py (original)
+++ 1.3/test_suite/system_tests/sequence.py Tue Apr  8 15:53:22 2008
@@ -58,9 +58,92 @@
 
         # Test some of the sequence.
         self.assertEqual(len(cdp.mol), 1)
+        self.assertEqual(cdp.mol.name, None)
         self.assertEqual(len(cdp.mol[0].res), 12)
-        for i in xrange(165):
-            self.assertEqual(len(cdp.mol[0].res[i].spin), 1)
+
+        # 1st residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 1)
+        self.assertEqual(cdp.mol[0].res[0].name, 'GLY')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 2nd residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 2)
+        self.assertEqual(cdp.mol[0].res[0].name, 'PRO')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 11)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 3rd residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 3)
+        self.assertEqual(cdp.mol[0].res[0].name, 'LEU')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 28)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 4th residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 4)
+        self.assertEqual(cdp.mol[0].res[0].name, 'GLY')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 51)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 5th residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 5)
+        self.assertEqual(cdp.mol[0].res[0].name, 'SER')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 59)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 6th residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 6)
+        self.assertEqual(cdp.mol[0].res[0].name, 'MET')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 71)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 7th residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 7)
+        self.assertEqual(cdp.mol[0].res[0].name, 'ASP')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 91)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 8th residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 8)
+        self.assertEqual(cdp.mol[0].res[0].name, 'SER')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 104)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 9th residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 9)
+        self.assertEqual(cdp.mol[0].res[0].name, 'PRO')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 116)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 10th residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 10)
+        self.assertEqual(cdp.mol[0].res[0].name, 'PRO')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 133)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 11th residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 11)
+        self.assertEqual(cdp.mol[0].res[0].name, 'GLU')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 150)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 12th residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 12)
+        self.assertEqual(cdp.mol[0].res[0].name, 'GLY')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 167)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
 
 
     def test_read(self):