mailr5897 - /1.3/generic_fns/angles.py


Others Months | Index by Date | Thread Index
>>   [Date Prev] [Date Next] [Thread Prev] [Thread Next]

Header


Content

Posted by edward on April 21, 2008 - 10:55:
Author: bugman
Date: Mon Apr 21 10:27:36 2008
New Revision: 5897

URL: http://svn.gna.org/viewcvs/relax?rev=5897&view=rev
Log:
Improvements to warning message in the spheroid_frame() function.


Modified:
    1.3/generic_fns/angles.py

Modified: 1.3/generic_fns/angles.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/generic_fns/angles.py?rev=5897&r1=5896&r2=5897&view=diff
==============================================================================
--- 1.3/generic_fns/angles.py (original)
+++ 1.3/generic_fns/angles.py Mon Apr 21 10:27:36 2008
@@ -28,7 +28,7 @@
 # relax module imports.
 from data import Data as relax_data_store
 from generic_fns import pipes
-from generic_fns.selection import exists_mol_res_spin_data, spin_loop
+from generic_fns.selection import exists_mol_res_spin_data, 
generate_spin_id, spin_loop
 from relax_errors import RelaxError, RelaxNoPdbError, RelaxNoSequenceError, 
RelaxNoTensorError
 from relax_warnings import RelaxWarning
 
@@ -101,10 +101,16 @@
     cdp = relax_data_store[relax_data_store.current_pipe]
 
     # Loop over the sequence.
-    for spin in spin_loop():
+    for spin, mol_name, res_num, res_name in spin_loop(full_info=True):
         # Test if the vector exists.
         if not hasattr(spin, 'xh_vect'):
-            warn(RelaxWarning("No angles could be calculated for residue '" 
+ str(spin.num) + " " + str(spin.name) + "'."))
+            # Get the spin id string.
+            spin_id = generate_spin_id(mol_name, res_num, res_name, 
spin.num, spin.name)
+
+            # Throw a warning.
+            warn(RelaxWarning("No angles could be calculated for the spin " 
+ `spin_id` + "."))
+
+            # Skip the spin.
             continue
 
         # Calculate alpha.




Related Messages


Powered by MHonArc, Updated Mon Apr 21 11:40:15 2008