Author: bugman
Date: Wed Sep 24 14:31:31 2008
New Revision: 7234
URL: http://svn.gna.org/viewcvs/relax?rev=7234&view=rev
Log:
Merged revisions 7076-7233 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
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r7094 | bugman | 2008-08-07 21:53:33 +0200 (Thu, 07 Aug 2008) | 3 lines
Modified the create_data() method to use the unimplemented base_data_loop()
generator method.
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r7095 | bugman | 2008-08-07 22:11:42 +0200 (Thu, 07 Aug 2008) | 3 lines
Created the base_data_loop() generator method for the base class for
looping over spins.
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r7096 | bugman | 2008-08-07 22:23:30 +0200 (Thu, 07 Aug 2008) | 3 lines
Made the base_data_loop() generator method accessible to the specific
analyses.
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r7097 | bugman | 2008-08-07 22:47:31 +0200 (Thu, 07 Aug 2008) | 3 lines
Updated create_mc_data() and sim_pack_data() to accept the spin_id yielded
by base_data_loop().
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r7098 | bugman | 2008-08-07 22:54:36 +0200 (Thu, 07 Aug 2008) | 5 lines
Updated the return_error() method to accept the spin_id arg.
This change doesn't actually do anything.
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r7099 | bugman | 2008-08-07 23:11:24 +0200 (Thu, 07 Aug 2008) | 5 lines
Implemented the create_mc_data() method.
In the 1.2 line, this was simply aliased to the return_data() method.
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r7100 | bugman | 2008-08-07 23:17:34 +0200 (Thu, 07 Aug 2008) | 3 lines
Added the missing self arg to create_mc_data().
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r7101 | bugman | 2008-08-07 23:28:31 +0200 (Thu, 07 Aug 2008) | 3 lines
Added a missing import.
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r7102 | bugman | 2008-08-07 23:34:36 +0200 (Thu, 07 Aug 2008) | 3 lines
Updated the return_error() to accept the spin_id arg.
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r7103 | bugman | 2008-08-07 23:53:41 +0200 (Thu, 07 Aug 2008) | 3 lines
Updated the sim_pack_data() method to the new design.
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r7104 | bugman | 2008-08-07 23:58:28 +0200 (Thu, 07 Aug 2008) | 3 lines
Fixed a call to the data_init() method.
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r7128 | bugman | 2008-08-10 00:02:18 +0200 (Sun, 10 Aug 2008) | 3 lines
Renamed the 'clean_temp' and 'clean' scons targets to 'clean' and
'clean_all' respectively.
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r7129 | bugman | 2008-08-10 13:50:55 +0200 (Sun, 10 Aug 2008) | 3 lines
The Monte Carlo error_analysis() function now uses the unimplemented
specific model_loop() method.
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r7190 | semor | 2008-08-12 23:06:07 +0200 (Tue, 12 Aug 2008) | 3 lines
Ported r7099, r7100, r7101, r7103 and r7104 to the consistency tests code.
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r7209 | bugman | 2008-08-19 16:54:28 +0200 (Tue, 19 Aug 2008) | 3 lines
Added a RelaxError for when the PDB MODEL record is corrupted.
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r7210 | bugman | 2008-08-20 20:22:16 +0200 (Wed, 20 Aug 2008) | 3 lines
Fixed a call to atom_add().
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r7211 | bugman | 2008-08-20 20:23:32 +0200 (Wed, 20 Aug 2008) | 3 lines
Typo bug fix for another call to the structural method atom_add().
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r7212 | bugman | 2008-08-20 20:27:46 +0200 (Wed, 20 Aug 2008) | 3 lines
Fixed some more calls to the structural method atom_add().
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r7213 | bugman | 2008-08-20 20:29:22 +0200 (Wed, 20 Aug 2008) | 3 lines
Fixed a call to the structural PDB writer.
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r7214 | bugman | 2008-08-20 20:42:37 +0200 (Wed, 20 Aug 2008) | 3 lines
The structural data structure for the cone is now properly initialised.
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r7215 | bugman | 2008-08-20 21:10:20 +0200 (Wed, 20 Aug 2008) | 3 lines
Fixed the creation of the PIV and AVE residues for the cone models.
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r7216 | bugman | 2008-08-21 14:55:19 +0200 (Thu, 21 Aug 2008) | 3 lines
Fixes for the cone_edge() function for the structural API changes.
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r7217 | bugman | 2008-08-21 15:50:13 +0200 (Thu, 21 Aug 2008) | 3 lines
Removed some debugging code.
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r7218 | bugman | 2008-08-21 16:18:14 +0200 (Thu, 21 Aug 2008) | 3 lines
Removed some useless code in generate_vector_residues().
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r7219 | bugman | 2008-08-21 17:57:51 +0200 (Thu, 21 Aug 2008) | 3 lines
First try at fixing the generate_vector_dist() function.
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r7220 | bugman | 2008-08-21 18:00:28 +0200 (Thu, 21 Aug 2008) | 3 lines
Atom number fixes for the cone_edge() function.
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r7221 | bugman | 2008-08-21 18:01:36 +0200 (Thu, 21 Aug 2008) | 3 lines
Fixed calls to the atom_connect() structural API method.
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r7222 | bugman | 2008-08-21 18:11:32 +0200 (Thu, 21 Aug 2008) | 3 lines
Fixed the call to and the execution of the stitch_cap_to_cone() function.
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r7223 | bugman | 2008-08-21 18:23:33 +0200 (Thu, 21 Aug 2008) | 3 lines
Fixed the cone_edge() function.
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r7224 | bugman | 2008-08-21 19:01:29 +0200 (Thu, 21 Aug 2008) | 3 lines
Fixed the generation of the diffusion in a cone geometric object.
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r7225 | bugman | 2008-08-21 22:07:54 +0200 (Thu, 21 Aug 2008) | 3 lines
Removed some debugging print statements.
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Modified:
branches/multi_processor_merge/ (props changed)
branches/multi_processor_merge/generic_fns/monte_carlo.py
branches/multi_processor_merge/generic_fns/structure/geometric.py
branches/multi_processor_merge/generic_fns/structure/internal.py
branches/multi_processor_merge/physical_constants.py
branches/multi_processor_merge/sconstruct
branches/multi_processor_merge/specific_fns/base_class.py
branches/multi_processor_merge/specific_fns/consistency_tests.py
branches/multi_processor_merge/specific_fns/jw_mapping.py
branches/multi_processor_merge/specific_fns/n_state_model.py
branches/multi_processor_merge/specific_fns/relax_fit.py
branches/multi_processor_merge/specific_fns/setup.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/multi_processor_merge/generic_fns/monte_carlo.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/generic_fns/monte_carlo.py?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/generic_fns/structure/geometric.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/generic_fns/structure/geometric.py?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/generic_fns/structure/internal.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/generic_fns/structure/internal.py?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/physical_constants.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/physical_constants.py?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/sconstruct
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/sconstruct?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/specific_fns/base_class.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/specific_fns/base_class.py?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/specific_fns/consistency_tests.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/specific_fns/consistency_tests.py?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/specific_fns/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/specific_fns/jw_mapping.py?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/specific_fns/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/specific_fns/n_state_model.py?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/specific_fns/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/specific_fns/relax_fit.py?rev=7234&r1=7233&r2=7234&view=diff
Modified: branches/multi_processor_merge/specific_fns/setup.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/specific_fns/setup.py?rev=7234&r1=7233&r2=7234&view=diff
r7234 - in /branches/multi_processor_merge: ./ generic_fns/ generic_fns/structure/ specific_fns/