Author: bugman
Date: Thu Oct 23 17:07:46 2008
New Revision: 7949
URL: http://svn.gna.org/viewcvs/relax?rev=7949&view=rev
Log:
Merged revisions 7937-7940,7942-7948 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
........
r7937 | bugman | 2008-10-22 22:25:33 +0200 (Wed, 22 Oct 2008) | 3 lines
Epydoc doctring indentation fixes.
........
r7938 | bugman | 2008-10-22 22:47:56 +0200 (Wed, 22 Oct 2008) | 5 lines
Added module docstrings and __docformat__ variables to all of the prompt
modules.
The __docformat__ string is set to 'plaintext' to make epydoc happy.
........
r7939 | bugman | 2008-10-22 22:55:51 +0200 (Wed, 22 Oct 2008) | 5 lines
Lots of epydoc fixes.
This is mainly title underline fixes.
........
r7940 | bugman | 2008-10-22 23:20:40 +0200 (Wed, 22 Oct 2008) | 3 lines
Massive epydoc fixes too all of the maths_fns modules!!!
........
r7942 | bugman | 2008-10-23 16:44:53 +0200 (Thu, 23 Oct 2008) | 6 lines
Fix for the relax IO logging with the -l command line argument.
This is a partial fix for bug #12489 (https://gna.org/bugs/?12489). The
teeing problem still has
to be fixed.
........
r7943 | bugman | 2008-10-23 16:54:43 +0200 (Thu, 23 Oct 2008) | 3 lines
Converted the tee class method into a module function.
........
r7944 | bugman | 2008-10-23 16:56:12 +0200 (Thu, 23 Oct 2008) | 3 lines
Epydoc'd the tee function docstring.
........
r7945 | bugman | 2008-10-23 16:57:45 +0200 (Thu, 23 Oct 2008) | 3 lines
Docstring improvements for the log() function.
........
r7946 | bugman | 2008-10-23 16:58:04 +0200 (Thu, 23 Oct 2008) | 3 lines
Removed a line of redundant code.
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r7947 | bugman | 2008-10-23 16:58:56 +0200 (Thu, 23 Oct 2008) | 3 lines
Added the missing import of relax_io.tee.
........
r7948 | bugman | 2008-10-23 17:01:18 +0200 (Thu, 23 Oct 2008) | 5 lines
Final fixes for bug #12489 (https://gna.org/bugs/?12489).
The log() and tee() functions are now operational.
........
Modified:
branches/spectral_errors/ (props changed)
branches/spectral_errors/maths_fns/correlation_time.py
branches/spectral_errors/maths_fns/direction_cosine.py
branches/spectral_errors/maths_fns/jw_mf.py
branches/spectral_errors/maths_fns/jw_mf_comps.py
branches/spectral_errors/maths_fns/mf.py
branches/spectral_errors/maths_fns/n_state_model.py
branches/spectral_errors/maths_fns/ri.py
branches/spectral_errors/maths_fns/ri_comps.py
branches/spectral_errors/maths_fns/ri_prime.py
branches/spectral_errors/maths_fns/rotation_matrix.py
branches/spectral_errors/maths_fns/weights.py
branches/spectral_errors/prompt/align_tensor.py
branches/spectral_errors/prompt/angles.py
branches/spectral_errors/prompt/consistency_tests.py
branches/spectral_errors/prompt/dasha.py
branches/spectral_errors/prompt/deselect.py
branches/spectral_errors/prompt/diffusion_tensor.py
branches/spectral_errors/prompt/dx.py
branches/spectral_errors/prompt/eliminate.py
branches/spectral_errors/prompt/fix.py
branches/spectral_errors/prompt/frq.py
branches/spectral_errors/prompt/gpl.py
branches/spectral_errors/prompt/grace.py
branches/spectral_errors/prompt/jw_mapping.py
branches/spectral_errors/prompt/minimisation.py
branches/spectral_errors/prompt/model_free.py
branches/spectral_errors/prompt/model_selection.py
branches/spectral_errors/prompt/molecule.py
branches/spectral_errors/prompt/molmol.py
branches/spectral_errors/prompt/monte_carlo.py
branches/spectral_errors/prompt/n_state_model.py
branches/spectral_errors/prompt/palmer.py
branches/spectral_errors/prompt/pcs.py
branches/spectral_errors/prompt/pipe.py
branches/spectral_errors/prompt/pymol.py
branches/spectral_errors/prompt/rdc.py
branches/spectral_errors/prompt/relax_data.py
branches/spectral_errors/prompt/relax_fit.py
branches/spectral_errors/prompt/residue.py
branches/spectral_errors/prompt/results.py
branches/spectral_errors/prompt/select.py
branches/spectral_errors/prompt/sequence.py
branches/spectral_errors/prompt/spin.py
branches/spectral_errors/prompt/state.py
branches/spectral_errors/prompt/structure.py
branches/spectral_errors/prompt/temperature.py
branches/spectral_errors/prompt/value.py
branches/spectral_errors/prompt/view.py
branches/spectral_errors/prompt/vmd.py
branches/spectral_errors/relax
branches/spectral_errors/relax_io.py
branches/spectral_errors/specific_fns/consistency_tests.py
branches/spectral_errors/specific_fns/jw_mapping.py
branches/spectral_errors/specific_fns/model_free/main.py
branches/spectral_errors/specific_fns/relax_fit.py
branches/spectral_errors/test_suite/test_suite_runner.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/spectral_errors/maths_fns/correlation_time.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/correlation_time.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/direction_cosine.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/direction_cosine.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/jw_mf.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/jw_mf.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/jw_mf_comps.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/jw_mf_comps.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/mf.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/mf.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/n_state_model.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/ri.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/ri.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/ri_comps.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/ri_comps.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/ri_prime.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/ri_prime.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/rotation_matrix.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/rotation_matrix.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/maths_fns/weights.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/maths_fns/weights.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/align_tensor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/align_tensor.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/angles.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/angles.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/consistency_tests.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/consistency_tests.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/dasha.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/dasha.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/deselect.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/deselect.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/diffusion_tensor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/diffusion_tensor.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/dx.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/dx.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/eliminate.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/eliminate.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/fix.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/fix.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/frq.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/frq.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/gpl.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/gpl.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/grace.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/grace.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/jw_mapping.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/minimisation.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/minimisation.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/model_free.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/model_free.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/model_selection.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/model_selection.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/molecule.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/molecule.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/molmol.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/molmol.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/monte_carlo.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/monte_carlo.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/n_state_model.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/palmer.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/palmer.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/pcs.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/pcs.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/pipe.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/pipe.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/pymol.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/pymol.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/rdc.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/rdc.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/relax_data.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/relax_data.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/relax_fit.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/residue.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/residue.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/results.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/results.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/select.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/select.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/sequence.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/sequence.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/spin.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/spin.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/state.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/state.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/structure.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/structure.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/temperature.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/temperature.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/value.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/value.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/view.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/view.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/prompt/vmd.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/prompt/vmd.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/relax
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/relax?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/relax_io.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/relax_io.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/specific_fns/consistency_tests.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/specific_fns/consistency_tests.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/specific_fns/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/specific_fns/jw_mapping.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/specific_fns/model_free/main.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/specific_fns/model_free/main.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/specific_fns/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/specific_fns/relax_fit.py?rev=7949&r1=7948&r2=7949&view=diff
Modified: branches/spectral_errors/test_suite/test_suite_runner.py
URL:
http://svn.gna.org/viewcvs/relax/branches/spectral_errors/test_suite/test_suite_runner.py?rev=7949&r1=7948&r2=7949&view=diff
r7949 - in /branches/spectral_errors: ./ maths_fns/ prompt/ specific_fns/ specific_fns/model_free/ test_suite/