r8026 - /1.3/test_suite/system_tests/structure.py -- November 26, 2008 - 18:02

Author: bugman
Date: Wed Nov 26 18:02:05 2008
New Revision: 8026

URL: http://svn.gna.org/viewcvs/relax?rev=8026&view=rev
Log:
Wrote 8 system tests for reading various PDB files using the internal and 
Scientific python objects.


Modified:
    1.3/test_suite/system_tests/structure.py

Modified: 1.3/test_suite/system_tests/structure.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/structure.py?rev=8026&r1=8025&r2=8026&view=diff
==============================================================================
--- 1.3/test_suite/system_tests/structure.py (original)
+++ 1.3/test_suite/system_tests/structure.py Wed Nov 26 18:02:05 2008
@@ -128,3 +128,85 @@
 
         # Check the atomic data.
         
self.assertEqual(cdp.structure.structural_data[0].peptide_chains[0].sequence(),
 res_name)
+
+
+    def test_read_pdb_internal1(self):
+        """Load the '1F35_N_H_molmol.pdb' PDB file (using the internal 
structural object PDB reader)."""
+
+        # Path of the files.
+        path = sys.path[-1] + '/test_suite/shared_data/structures'
+
+        # Read the PDB.
+        
self.relax.interpreter._Structure.read_pdb(file='1F35_N_H_molmol.pdb', 
dir=path, parser='internal')
+
+
+    def test_read_pdb_internal2(self):
+        """Load the 'Ap4Aase_res1-12.pdb' PDB file (using the internal 
structural object PDB reader)."""
+
+        # Path of the files.
+        path = sys.path[-1] + '/test_suite/shared_data/structures'
+
+        # Read the PDB.
+        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=path, parser='internal')
+
+
+    def test_read_pdb_internal3(self):
+        """Load the 'gromacs_phthalic_acid.pdb' PDB file (using the internal 
structural object PDB reader)."""
+
+        # Path of the files.
+        path = sys.path[-1] + '/test_suite/shared_data/structures'
+
+        # Read the PDB.
+        
self.relax.interpreter._Structure.read_pdb(file='gromacs_phthalic_acid.pdb', 
dir=path, parser='internal')
+
+
+    def test_read_pdb_internal4(self):
+        """Load the 'tylers_peptide_trunc.pdb' PDB file (using the internal 
structural object PDB reader)."""
+
+        # Path of the files.
+        path = sys.path[-1] + '/test_suite/shared_data/structures'
+
+        # Read the PDB.
+        
self.relax.interpreter._Structure.read_pdb(file='tylers_peptide_trunc.pdb', 
dir=path, parser='internal')
+
+
+    def test_read_pdb_scientific1(self):
+        """Load the '1F35_N_H_molmol.pdb' PDB file (using the Scientific 
python structural object PDB reader)."""
+
+        # Path of the files.
+        path = sys.path[-1] + '/test_suite/shared_data/structures'
+
+        # Read the PDB.
+        
self.relax.interpreter._Structure.read_pdb(file='1F35_N_H_molmol.pdb', 
dir=path, parser='scientific')
+
+
+    def test_read_pdb_scientific2(self):
+        """Load the 'Ap4Aase_res1-12.pdb' PDB file (using the Scientific 
python structural object PDB reader)."""
+
+        # Path of the files.
+        path = sys.path[-1] + '/test_suite/shared_data/structures'
+
+        # Read the PDB.
+        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=path, parser='scientific')
+
+
+    def test_read_pdb_scientific3(self):
+        """Load the 'gromacs_phthalic_acid.pdb' PDB file (using the 
Scientific python structural object PDB reader)."""
+
+        # Path of the files.
+        path = sys.path[-1] + '/test_suite/shared_data/structures'
+
+        # Read the PDB.
+        
self.relax.interpreter._Structure.read_pdb(file='gromacs_phthalic_acid.pdb', 
dir=path, parser='scientific')
+
+
+    def test_read_pdb_scientific4(self):
+        """Load the 'tylers_peptide_trunc.pdb' PDB file (using the 
Scientific python structural object PDB reader)."""
+
+        # Path of the files.
+        path = sys.path[-1] + '/test_suite/shared_data/structures'
+
+        # Read the PDB.
+        
self.relax.interpreter._Structure.read_pdb(file='tylers_peptide_trunc.pdb', 
dir=path, parser='scientific')
+
+