r8100 - /1.3/test_suite/system_tests/scripts/1UBQ_relax_fit.py -- December 03, 2008 - 14:15

Author: bugman
Date: Wed Dec  3 14:15:15 2008
New Revision: 8100

URL: http://svn.gna.org/viewcvs/relax?rev=8100&view=rev
Log:
The script for reproducing bug #12670 (https://gna.org/bugs/index.php?12670) 
now works.

This bug was reported by Michael Funk (mifu att nmr dot mpibpc dot mpg dot 
de).


Modified:
    1.3/test_suite/system_tests/scripts/1UBQ_relax_fit.py

Modified: 1.3/test_suite/system_tests/scripts/1UBQ_relax_fit.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/scripts/1UBQ_relax_fit.py?rev=8100&r1=8099&r2=8100&view=diff
==============================================================================
--- 1.3/test_suite/system_tests/scripts/1UBQ_relax_fit.py (original)
+++ 1.3/test_suite/system_tests/scripts/1UBQ_relax_fit.py Wed Dec  3 14:15:15 
2008
@@ -1,10 +1,17 @@
 # Script for catching bug #12670 (https://gna.org/bugs/index.php?12670) as 
submitted by Michael Funk (mifu att nmr dot mpibpc dot mpg dot de).
+
+import sys
+
 
 # Create the 'rx' data pipe.
 pipe.create('rx', 'relax_fit')
 
+# The paths to the data files.
+seq_path = sys.path[-1] + '/test_suite/shared_data/sequence'
+list_path = sys.path[-1] + '/test_suite/shared_data/peak_lists'
+
 # Load the sequence.
-sequence.read('1UBQ.seq', mol_name_col=0, res_num_col=1, res_name_col=2, 
spin_num_col=3, spin_name_col=4)
+sequence.read('1UBQ.seq', dir=seq_path, mol_name_col=0, res_num_col=1, 
res_name_col=2, spin_num_col=3, spin_name_col=4)
 
 # Spectrum names.
 names = [
@@ -36,7 +43,7 @@
 # Loop over the spectra.
 for i in xrange(len(names)):
     # Load the peak intensities.
-    spectrum.read_intensities(file=names[i]+'.listb', dir=data_path, 
spectrum_id=names[i], int_method='height', proton='H')
+    spectrum.read_intensities(file=names[i]+'.listb', dir=list_path, 
spectrum_id=names[i], int_method='height', proton='H')
 
     # Set the relaxation times.
     relax_fit.relax_time(time=times[i], spectrum_id=names[i])