r8371 - in /branches/bmrb/test_suite/system_tests: __init__.py bmrb.py -- January 11, 2009 - 12:20

Author: bugman
Date: Sun Jan 11 12:20:07 2009
New Revision: 8371

URL: http://svn.gna.org/viewcvs/relax?rev=8371&view=rev
Log:
Created a system test for the writing and reading of a BRMB STAR formatted 
file.


Added:
    branches/bmrb/test_suite/system_tests/bmrb.py
Modified:
    branches/bmrb/test_suite/system_tests/__init__.py

Modified: branches/bmrb/test_suite/system_tests/__init__.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/__init__.py?rev=8371&r1=8370&r2=8371&view=diff
==============================================================================
--- branches/bmrb/test_suite/system_tests/__init__.py (original)
+++ branches/bmrb/test_suite/system_tests/__init__.py Sun Jan 11 12:20:07 2009
@@ -32,6 +32,7 @@
 
 # relax system/functional test module imports.
 from angles import Angles
+from bmrb import Bmrb
 from consistency_tests import Ct
 from dasha import Dasha
 from diffusion_tensor import Diffusion_tensor
@@ -55,6 +56,7 @@
 
 
 __all__ = ['angles',
+           'brmb',
            'consistency_tests',
            'dasha'
            'diffusion_tensor',
@@ -96,6 +98,7 @@
         # Create an array of test suites (add your new TestCase classes 
here).
         suite_array = []
         suite_array.append(TestLoader().loadTestsFromTestCase(Angles))
+        suite_array.append(TestLoader().loadTestsFromTestCase(Bmrb))
         suite_array.append(TestLoader().loadTestsFromTestCase(Ct))
         suite_array.append(TestLoader().loadTestsFromTestCase(Dasha))
         
suite_array.append(TestLoader().loadTestsFromTestCase(Diffusion_tensor))

Added: branches/bmrb/test_suite/system_tests/bmrb.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/bmrb.py?rev=8371&view=auto
==============================================================================
--- branches/bmrb/test_suite/system_tests/bmrb.py (added)
+++ branches/bmrb/test_suite/system_tests/bmrb.py Sun Jan 11 12:20:07 2009
@@ -1,0 +1,74 @@
+###############################################################################
+#                                                                            
 #
+# Copyright (C) 2008 Edward d'Auvergne                                       
 #
+#                                                                            
 #
+# This file is part of the program relax.                                    
 #
+#                                                                            
 #
+# relax is free software; you can redistribute it and/or modify              
 #
+# it under the terms of the GNU General Public License as published by       
 #
+# the Free Software Foundation; either version 2 of the License, or          
 #
+# (at your option) any later version.                                        
 #
+#                                                                            
 #
+# relax is distributed in the hope that it will be useful,                   
 #
+# but WITHOUT ANY WARRANTY; without even the implied warranty of             
 #
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the              
 #
+# GNU General Public License for more details.                               
 #
+#                                                                            
 #
+# You should have received a copy of the GNU General Public License          
 #
+# along with relax; if not, write to the Free Software                       
 #
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA  
 #
+#                                                                            
 #
+###############################################################################
+
+# Python module imports.
+from os import remove
+import sys
+from tempfile import mktemp
+from unittest import TestCase
+
+# relax module imports.
+from data import Relax_data_store; ds = Relax_data_store()
+
+
+class Bmrb(TestCase):
+    """TestCase class for functional tests of the reading and writing of 
BMRB STAR formatted files."""
+
+    def setUp(self):
+        """Common set up for these system tests."""
+
+        # Create a temporary file name.
+        self.tmpfile = mktemp()
+
+
+    def tearDown(self):
+        """Reset the relax data storage object."""
+
+        # Reset the relax data storage object.
+        ds.__reset__()
+
+        # Delete the temporary file.
+        try:
+            remove(self.tmpfile)
+        except OSError:
+            pass
+
+
+    def test_rw_bmrb_model_free(self):
+        """Write and then read a BRMB STAR formatted file containing 
model-free results."""
+
+        # Path of the files.
+        path = sys.path[-1] + '/test_suite/shared_data/model_free/OMP'
+
+        # Read the relax results file.
+        self.relax.interpreter._Pipe.create('results', 'mf')
+        self.relax.interpreter._Results.read(file='final_results_trunc_1.3', 
dir=path)
+
+        # Write the BMRB STAR formatted file.
+        self.relax.interpreter._Bmrb.write(file=self.tmpfile, force=True)
+
+        # Create a new data pipe for reading the data back in.
+        self.relax.interpreter._Pipe.create('bmrb', 'mf')
+
+        # Read the BMRB STAR formatted file.
+        self.relax.interpreter._Bmrb.read(file=self.tmpfile)
+