r8509 - /branches/multi_structure/generic_fns/structure/internal.py -- January 19, 2009 - 11:21

Author: bugman
Date: Mon Jan 19 11:21:07 2009
New Revision: 8509

URL: http://svn.gna.org/viewcvs/relax?rev=8509&view=rev
Log:
More bug fixes for bond_vectors().  The index i no longer exists!


Modified:
    branches/multi_structure/generic_fns/structure/internal.py

Modified: branches/multi_structure/generic_fns/structure/internal.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/multi_structure/generic_fns/structure/internal.py?rev=8509&r1=8508&r2=8509&view=diff
==============================================================================
--- branches/multi_structure/generic_fns/structure/internal.py (original)
+++ branches/multi_structure/generic_fns/structure/internal.py Mon Jan 19 
11:21:07 2009
@@ -486,9 +486,9 @@
                 atom_found = False
 
                 # Loop over all atoms.
-                for j in xrange(len(mol.atom_name)):
+                for i in xrange(len(mol.atom_name)):
                     # Skip non-matching atoms.
-                    if sel_obj and not 
sel_obj.contains_spin(mol.atom_num[j], mol.atom_name[j], mol.res_num[j], 
mol.res_name[j], self.name[i]):
+                    if sel_obj and not 
sel_obj.contains_spin(mol.atom_num[i], mol.atom_name[i], mol.res_num[i], 
mol.res_name[i], mol.name):
                         continue
 
                     # More than one matching atom!
@@ -497,12 +497,12 @@
 
                     # The atom has been found, so store some info.
                     atom_found = True
-                    index = j
+                    index = i
 
                 # Found the atom.
                 if atom_found:
                     # Get the atom bonded to this 
model/molecule/residue/atom.
-                    bonded_num, bonded_name, element, pos, attached_name, 
warnings = self.__bonded_atom(attached_atom, index, i)
+                    bonded_num, bonded_name, element, pos, attached_name, 
warnings = self.__bonded_atom(attached_atom, index, mol)
 
                     # No bonded atom.
                     if (bonded_num, bonded_name, element) == (None, None, 
None):