r8549 - /branches/multi_structure/test_suite/system_tests/sequence.py -- January 20, 2009 - 16:27

Author: bugman
Date: Tue Jan 20 16:27:29 2009
New Revision: 8549

URL: http://svn.gna.org/viewcvs/relax?rev=8549&view=rev
Log:
Fixes for the call to the structure.read_pdb() user function.


Modified:
    branches/multi_structure/test_suite/system_tests/sequence.py

Modified: branches/multi_structure/test_suite/system_tests/sequence.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/multi_structure/test_suite/system_tests/sequence.py?rev=8549&r1=8548&r2=8549&view=diff
==============================================================================
--- branches/multi_structure/test_suite/system_tests/sequence.py (original)
+++ branches/multi_structure/test_suite/system_tests/sequence.py Tue Jan 20 
16:27:29 2009
@@ -49,7 +49,7 @@
         """Load all aspartic acid atoms from the single residue in a loaded 
protein PDB file."""
 
         # Read the PDB file.
-        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=sys.path[-1] + '/test_suite/shared_data/structures', model=1)
+        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=sys.path[-1] + '/test_suite/shared_data/structures', read_model=1)
 
         # Load all the ASP atoms (1 molecule, 1 ASP residue, and all atoms).
         self.relax.interpreter._Structure.load_spins(spin_id=':ASP')
@@ -96,7 +96,7 @@
         """Load the glycine backbone amide N and Ca spins from a loaded 
protein PDB file."""
 
         # Read the PDB file.
-        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=sys.path[-1] + '/test_suite/shared_data/structures', model=1)
+        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=sys.path[-1] + '/test_suite/shared_data/structures', read_model=1)
 
         # Generate the sequence of nitrogen spins (1 molecule, all GLY 
residues, and only N spins).
         self.relax.interpreter._Structure.load_spins(spin_id=':GLY@N')
@@ -144,7 +144,7 @@
         """Load the glycine backbone amide N spins from a loaded protein PDB 
file."""
 
         # Read the PDB file.
-        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=sys.path[-1] + '/test_suite/shared_data/structures', model=1)
+        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=sys.path[-1] + '/test_suite/shared_data/structures', read_model=1)
 
         # Generate the sequence (1 molecule, all GLY residues, and only N 
spins).
         self.relax.interpreter._Structure.load_spins(spin_id=':GLY@N')
@@ -183,7 +183,7 @@
         """Load the protein backbone amide N spins from a loaded PDB file."""
 
         # Read the PDB file.
-        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=sys.path[-1] + '/test_suite/shared_data/structures', model=1)
+        
self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb', 
dir=sys.path[-1] + '/test_suite/shared_data/structures', read_model=1)
 
         # Generate the sequence (1 molecule, all residues, and only N spins).
         self.relax.interpreter._Structure.load_spins(spin_id='@N')