Author: semor
Date: Sat Mar 14 17:16:08 2009
New Revision: 8978
URL: http://svn.gna.org/viewcvs/relax?rev=8978&view=rev
Log:
Merged revisions 8925-8927,8929,8932,8935,8963,8971-8972,8974,8976-8977 via
svnmerge from
svn+ssh://semor@xxxxxxxxxxx/svn/relax/1.3
........
r8925 | bugman | 2009-03-06 13:21:27 -0500 (Fri, 06 Mar 2009) | 5 lines
The read() function has been split into to for code recycling in the bmrb
branch.
The new pack_data() function has been spun off to fill the data pipe and
spin containers.
........
r8926 | bugman | 2009-03-06 13:25:21 -0500 (Fri, 06 Mar 2009) | 5 lines
Bug fix for the read() function.
The construction of the data for sending to pack_data() was failing.
........
r8927 | bugman | 2009-03-06 13:25:49 -0500 (Fri, 06 Mar 2009) | 3 lines
Spacing fix.
........
r8929 | bugman | 2009-03-08 17:36:03 -0400 (Sun, 08 Mar 2009) | 3 lines
None args are now allowed in pack_data(), and the arg lengths are checked.
........
r8932 | bugman | 2009-03-08 18:35:24 -0400 (Sun, 08 Mar 2009) | 7 lines
Redesigned the spin.create() and residue.create() user functions.
The res_id and mol_id args are no longer supplied. Instead the residue
name and number and molecule
name is used. If the molecule or residue does not exist when these user
functions are called, then
they will be automatically created.
........
r8935 | bugman | 2009-03-08 18:43:20 -0400 (Sun, 08 Mar 2009) | 5 lines
Fix for the pack_data() function.
The spin wasn't being fetched after its creation.
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r8963 | semor | 2009-03-10 15:52:43 -0400 (Tue, 10 Mar 2009) | 7 lines
Fix for bug 13163 : latex_mf_table.py sample script broken.
Discussion on this topic is in a thread at:
https://mail.gna.org/public/relax-devel/2009-03/msg00007.html
(Message-id: <49B6A6B1.4080305@xxxxxxxxx>)
........
r8971 | bugman | 2009-03-12 05:37:49 -0400 (Thu, 12 Mar 2009) | 3 lines
Modified the full_analysis.py script to perform 500 MC sims and turned on
automatic looping.
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r8972 | bugman | 2009-03-12 06:25:53 -0400 (Thu, 12 Mar 2009) | 5 lines
Added a line with the relax URL (http://nmr-relax.com) in the script
docstring.
This is in case someone has the script and not relax.
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r8974 | semor | 2009-03-12 13:17:30 -0400 (Thu, 12 Mar 2009) | 7 lines
Fix for bug 13162: Rex values in XML results file not in s-1.
The units are now correctly given in the XML results fiel as discussed in a
thread at:
https://mail.gna.org/public/relax-devel/2009-03/msg00010.html
(Message-id: <20090310-141629.sv7147.79009@xxxxxxx>)
........
r8976 | semor | 2009-03-12 13:56:28 -0400 (Thu, 12 Mar 2009) | 10 lines
Reverted r8974.
This follows a remark by Ed at:
https://mail.gna.org/public/relax-devel/2009-03/msg00033.html
(Message-id: <7f080ed10903121024h7a0a3808m3c268ca1f276ee4a@xxxxxxxxxxxxxx>)
The command used was:
svn merge -r8974:8973 .
........
r8977 | semor | 2009-03-12 14:01:24 -0400 (Thu, 12 Mar 2009) | 7 lines
Now correctly fixed bug 13162: Rex values in XML results file not in s-1.
This follows a remark by Ed at:
https://mail.gna.org/public/relax-devel/2009-03/msg00033.html
(Message-id: <7f080ed10903121024h7a0a3808m3c268ca1f276ee4a@xxxxxxxxxxxxxx>)
........
Modified:
branches/relax_disp/ (props changed)
branches/relax_disp/generic_fns/mol_res_spin.py
branches/relax_disp/generic_fns/relax_data.py
branches/relax_disp/prompt/residue.py
branches/relax_disp/prompt/spin.py
branches/relax_disp/sample_scripts/full_analysis.py
branches/relax_disp/sample_scripts/latex_mf_table.py
branches/relax_disp/specific_fns/model_free/main.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_residue.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_spin.py
branches/relax_disp/test_suite/unit_tests/spin_testing_base.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/relax_disp/generic_fns/mol_res_spin.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/generic_fns/mol_res_spin.py?rev=8978&r1=8977&r2=8978&view=diff
Modified: branches/relax_disp/generic_fns/relax_data.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/generic_fns/relax_data.py?rev=8978&r1=8977&r2=8978&view=diff
Modified: branches/relax_disp/prompt/residue.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/prompt/residue.py?rev=8978&r1=8977&r2=8978&view=diff
Modified: branches/relax_disp/prompt/spin.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/prompt/spin.py?rev=8978&r1=8977&r2=8978&view=diff
Modified: branches/relax_disp/sample_scripts/full_analysis.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/sample_scripts/full_analysis.py?rev=8978&r1=8977&r2=8978&view=diff
Modified: branches/relax_disp/sample_scripts/latex_mf_table.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/sample_scripts/latex_mf_table.py?rev=8978&r1=8977&r2=8978&view=diff
Modified: branches/relax_disp/specific_fns/model_free/main.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/specific_fns/model_free/main.py?rev=8978&r1=8977&r2=8978&view=diff
Modified: branches/relax_disp/test_suite/unit_tests/_prompt/test_residue.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/test_suite/unit_tests/_prompt/test_residue.py?rev=8978&r1=8977&r2=8978&view=diff
Modified: branches/relax_disp/test_suite/unit_tests/_prompt/test_spin.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/test_suite/unit_tests/_prompt/test_spin.py?rev=8978&r1=8977&r2=8978&view=diff
Modified: branches/relax_disp/test_suite/unit_tests/spin_testing_base.py
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/test_suite/unit_tests/spin_testing_base.py?rev=8978&r1=8977&r2=8978&view=diff
r8978 - in /branches/relax_disp: ./ generic_fns/ prompt/ sample_scripts/ specific_fns/model_free/ test_suite/unit_tests/ tes...