Author: bugman
Date: Fri Aug 14 11:37:56 2009
New Revision: 9312
URL: http://svn.gna.org/viewcvs/relax?rev=9312&view=rev
Log:
Merged revisions 9275-9310 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
........
r9276 | bugman | 2009-08-12 13:06:51 +0200 (Wed, 12 Aug 2009) | 3 lines
Made the structure system tests more compatible with non-Unix operating
systems.
........
r9277 | bugman | 2009-08-12 13:11:27 +0200 (Wed, 12 Aug 2009) | 3 lines
Made get_file_path() and mkdir_nofail() compatible with non-Unix systems.
........
r9278 | bugman | 2009-08-12 13:16:06 +0200 (Wed, 12 Aug 2009) | 3 lines
Made the full_analysis.py script more compatible with non-Unix operating
systems.
........
r9279 | bugman | 2009-08-12 13:18:30 +0200 (Wed, 12 Aug 2009) | 3 lines
Fix for test_load_scientific_results(). The Unix paths are used in the
results file!
........
r9280 | bugman | 2009-08-12 13:23:15 +0200 (Wed, 12 Aug 2009) | 3 lines
Non-Unix os fix.
........
r9281 | bugman | 2009-08-12 13:54:53 +0200 (Wed, 12 Aug 2009) | 3 lines
Modified the unit tests to be more non-Unix operating system compatible.
........
r9282 | bugman | 2009-08-12 14:25:49 +0200 (Wed, 12 Aug 2009) | 3 lines
Modified the system tests to be more non-Unix operating system compatible.
........
r9283 | bugman | 2009-08-12 14:38:00 +0200 (Wed, 12 Aug 2009) | 4 lines
Modified the shared data scripts to be more non-Unix operating system
compatible.
........
r9284 | bugman | 2009-08-12 14:53:54 +0200 (Wed, 12 Aug 2009) | 3 lines
Removed the last '/' directory separators to be more non-Unix operating
system compatible.
........
r9285 | bugman | 2009-08-12 15:02:38 +0200 (Wed, 12 Aug 2009) | 3 lines
Removed a reference to the '..' dir.
........
r9286 | bugman | 2009-08-12 15:05:03 +0200 (Wed, 12 Aug 2009) | 3 lines
Redid r9279! This was accidentally reverted by hand in r9282!!!
........
r9287 | bugman | 2009-08-12 15:34:50 +0200 (Wed, 12 Aug 2009) | 3 lines
Caught a NaN problem in __q_factors_rdc() causing a system test to fail in
Windows.
........
r9288 | bugman | 2009-08-12 18:57:21 +0200 (Wed, 12 Aug 2009) | 7 lines
Massive clean up of the float module unit tests.
As a general clean up, the module has been converted to the relax coding
conventions. Importantly
the floating point numbers defined as constants for the tests are now
properly defined using the
packBytesAsPyFloat() function. This will allow these tests to pass on all
machines!
........
r9290 | bugman | 2009-08-12 20:04:53 +0200 (Wed, 12 Aug 2009) | 8 lines
Ported the CHANGES file for relax version 1.2.15 to the 1.3 line.
This was obviously forgotten when the release was made.
The command used was:
svn merge -r8033:8034 svn+ssh://bugman@xxxxxxxxxxx/svn/relax/tags/1.2.15 .
........
r9292 | bugman | 2009-08-13 15:20:47 +0200 (Thu, 13 Aug 2009) | 5 lines
Updated the _off() and _on() user function echoing methods.
The flag is now a boolean, and the message has been reworded.
........
r9303 | bugman | 2009-08-14 10:49:12 +0200 (Fri, 14 Aug 2009) | 3 lines
Updated the release checklist document to reflect Gna! and Freshmeat
website changes.
........
r9304 | bugman | 2009-08-14 10:51:09 +0200 (Fri, 14 Aug 2009) | 3 lines
Converted a number of flags from int to bool.
........
r9305 | bugman | 2009-08-14 11:04:30 +0200 (Fri, 14 Aug 2009) | 3 lines
More changes to the release checklist document.
........
r9306 | bugman | 2009-08-14 11:06:06 +0200 (Fri, 14 Aug 2009) | 3 lines
Added a script for running the full relax test suite against different
Python versions.
........
r9307 | bugman | 2009-08-14 11:19:20 +0200 (Fri, 14 Aug 2009) | 3 lines
Fix for the test_opt_constr_newton_gmw_mt_S2_0_970_te_2048_Rex_0_149()
system test for Python 2.5.
........
r9308 | bugman | 2009-08-14 11:25:29 +0200 (Fri, 14 Aug 2009) | 3 lines
Created a directory for holding miscellaneous scripts for developers.
........
r9309 | bugman | 2009-08-14 11:25:55 +0200 (Fri, 14 Aug 2009) | 3 lines
Shifted the python version checking script.
........
r9310 | bugman | 2009-08-14 11:28:20 +0200 (Fri, 14 Aug 2009) | 3 lines
Shifted the code validation script from the website hidden location into
the scripts directory.
........
Added:
branches/bmrb/scripts/
- copied from r9310, 1.3/scripts/
Modified:
branches/bmrb/ (props changed)
branches/bmrb/docs/CHANGES
branches/bmrb/docs/Release_Checklist
branches/bmrb/generic_fns/dasha.py
branches/bmrb/generic_fns/palmer.py
branches/bmrb/prompt/interpreter.py
branches/bmrb/relax_io.py
branches/bmrb/sample_scripts/full_analysis.py
branches/bmrb/sample_scripts/xh_vector_dist.py
branches/bmrb/scons/manuals.py
branches/bmrb/specific_fns/n_state_model.py
branches/bmrb/test_suite/shared_data/align_data/CaM/generate_data.py
branches/bmrb/test_suite/shared_data/align_data/CaM/pre_bleach.py
branches/bmrb/test_suite/shared_data/saved_states/create_peak_heights_T2_ncyc1.py
branches/bmrb/test_suite/shared_data/structures/generate_str_scientific_results.py
branches/bmrb/test_suite/system_tests/angles.py
branches/bmrb/test_suite/system_tests/consistency_tests.py
branches/bmrb/test_suite/system_tests/dasha.py
branches/bmrb/test_suite/system_tests/diffusion_tensor.py
branches/bmrb/test_suite/system_tests/generic.py
branches/bmrb/test_suite/system_tests/jw_mapping.py
branches/bmrb/test_suite/system_tests/load_spins.py
branches/bmrb/test_suite/system_tests/model_elimination.py
branches/bmrb/test_suite/system_tests/model_free.py
branches/bmrb/test_suite/system_tests/model_selection.py
branches/bmrb/test_suite/system_tests/n_state_model.py
branches/bmrb/test_suite/system_tests/noe.py
branches/bmrb/test_suite/system_tests/noe_restraints.py
branches/bmrb/test_suite/system_tests/palmer.py
branches/bmrb/test_suite/system_tests/peak_lists.py
branches/bmrb/test_suite/system_tests/relax_fit.py
branches/bmrb/test_suite/system_tests/results.py
branches/bmrb/test_suite/system_tests/scripts/1UBQ_relax_fit.py
branches/bmrb/test_suite/system_tests/scripts/align_fit.py
branches/bmrb/test_suite/system_tests/scripts/angles.py
branches/bmrb/test_suite/system_tests/scripts/bugs_12582_12591_12607.py
branches/bmrb/test_suite/system_tests/scripts/consistency_tests.py
branches/bmrb/test_suite/system_tests/scripts/create_m4.py
branches/bmrb/test_suite/system_tests/scripts/dasha.py
branches/bmrb/test_suite/system_tests/scripts/jw_mapping.py
branches/bmrb/test_suite/system_tests/scripts/lactose_n_state.py
branches/bmrb/test_suite/system_tests/scripts/latex_mf_table.py
branches/bmrb/test_suite/system_tests/scripts/load_spins_from_small_molecule.py
branches/bmrb/test_suite/system_tests/scripts/local_tm_model_elimination.py
branches/bmrb/test_suite/system_tests/scripts/noe.py
branches/bmrb/test_suite/system_tests/scripts/omp_model_free.py
branches/bmrb/test_suite/system_tests/scripts/opendx_s2_te_rex.py
branches/bmrb/test_suite/system_tests/scripts/opt_setup_S2_0_970_te_2048_Rex_0_149.py
branches/bmrb/test_suite/system_tests/scripts/palmer.py
branches/bmrb/test_suite/system_tests/scripts/palmer_omp.py
branches/bmrb/test_suite/system_tests/scripts/phthalic_acid_noes.py
branches/bmrb/test_suite/system_tests/scripts/relax_fit.py
branches/bmrb/test_suite/system_tests/scripts/tylers_peptide.py
branches/bmrb/test_suite/system_tests/scripts/xh_vector_dist.py
branches/bmrb/test_suite/system_tests/sequence.py
branches/bmrb/test_suite/system_tests/structure.py
branches/bmrb/test_suite/system_tests/unit_vectors.py
branches/bmrb/test_suite/test_suite_runner.py
branches/bmrb/test_suite/unit_tests/_generic_fns/_structure/test_internal.py
branches/bmrb/test_suite/unit_tests/_generic_fns/_structure/test_scientific.py
branches/bmrb/test_suite/unit_tests/_specific_fns/_model_free/test_main.py
branches/bmrb/test_suite/unit_tests/relax_data_testing_base.py
branches/bmrb/test_suite/unit_tests/sequence_testing_base.py
branches/bmrb/test_suite/unit_tests/state_testing_base.py
branches/bmrb/test_suite/unit_tests/test_float.py
branches/bmrb/test_suite/unit_tests/test_relax_io.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/bmrb/docs/CHANGES
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/docs/CHANGES?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/docs/Release_Checklist
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/docs/Release_Checklist?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/generic_fns/dasha.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/generic_fns/dasha.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/generic_fns/palmer.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/generic_fns/palmer.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/prompt/interpreter.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/prompt/interpreter.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/relax_io.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/relax_io.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/sample_scripts/full_analysis.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/sample_scripts/full_analysis.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/sample_scripts/xh_vector_dist.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/sample_scripts/xh_vector_dist.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/scons/manuals.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/scons/manuals.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/specific_fns/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/n_state_model.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/shared_data/align_data/CaM/generate_data.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/shared_data/align_data/CaM/generate_data.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/shared_data/align_data/CaM/pre_bleach.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/shared_data/align_data/CaM/pre_bleach.py?rev=9312&r1=9311&r2=9312&view=diff
Modified:
branches/bmrb/test_suite/shared_data/saved_states/create_peak_heights_T2_ncyc1.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/shared_data/saved_states/create_peak_heights_T2_ncyc1.py?rev=9312&r1=9311&r2=9312&view=diff
Modified:
branches/bmrb/test_suite/shared_data/structures/generate_str_scientific_results.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/shared_data/structures/generate_str_scientific_results.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/angles.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/angles.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/consistency_tests.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/consistency_tests.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/dasha.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/dasha.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/diffusion_tensor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/diffusion_tensor.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/generic.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/generic.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/jw_mapping.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/load_spins.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/load_spins.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/model_elimination.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/model_elimination.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/model_free.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/model_free.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/model_selection.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/model_selection.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/n_state_model.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/noe.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/noe.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/noe_restraints.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/noe_restraints.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/palmer.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/palmer.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/peak_lists.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/peak_lists.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/relax_fit.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/results.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/results.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/1UBQ_relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/1UBQ_relax_fit.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/align_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/align_fit.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/angles.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/angles.py?rev=9312&r1=9311&r2=9312&view=diff
Modified:
branches/bmrb/test_suite/system_tests/scripts/bugs_12582_12591_12607.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/bugs_12582_12591_12607.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/consistency_tests.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/consistency_tests.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/create_m4.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/create_m4.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/dasha.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/dasha.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/jw_mapping.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/lactose_n_state.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/lactose_n_state.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/latex_mf_table.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/latex_mf_table.py?rev=9312&r1=9311&r2=9312&view=diff
Modified:
branches/bmrb/test_suite/system_tests/scripts/load_spins_from_small_molecule.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/load_spins_from_small_molecule.py?rev=9312&r1=9311&r2=9312&view=diff
Modified:
branches/bmrb/test_suite/system_tests/scripts/local_tm_model_elimination.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/local_tm_model_elimination.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/noe.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/noe.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/omp_model_free.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/omp_model_free.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/opendx_s2_te_rex.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/opendx_s2_te_rex.py?rev=9312&r1=9311&r2=9312&view=diff
Modified:
branches/bmrb/test_suite/system_tests/scripts/opt_setup_S2_0_970_te_2048_Rex_0_149.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/opt_setup_S2_0_970_te_2048_Rex_0_149.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/palmer.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/palmer.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/palmer_omp.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/palmer_omp.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/phthalic_acid_noes.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/phthalic_acid_noes.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/relax_fit.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/tylers_peptide.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/tylers_peptide.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/scripts/xh_vector_dist.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/scripts/xh_vector_dist.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/sequence.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/sequence.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/structure.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/structure.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/system_tests/unit_vectors.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/unit_vectors.py?rev=9312&r1=9311&r2=9312&view=diff
Modified: branches/bmrb/test_suite/test_suite_runner.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/test_suite_runner.py?rev=9312&r1=9311&r2=9312&view=diff
Modified:
branches/bmrb/test_suite/unit_tests/_generic_fns/_structure/test_internal.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/unit_tests/_generic_fns/_structure/test_internal.py?rev=9312&r1=9311&r2=9312&view=diff
Modified:
branches/bmrb/test_suite/unit_tests/_generic_fns/_structure/test_scientific.py
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