Author: semor
Date: Wed Oct 7 20:30:34 2009
New Revision: 9649
URL: http://svn.gna.org/viewcvs/relax?rev=9649&view=rev
Log:
Modified the sequence.read() entries in order to reflect the new design.
The sequence.read() function now absolutely needs an argument for
res_num_col. Hence, this argument
is now shown in the sample script in order to avoid the users lose time
figuring out where their
script went bad...
Modified:
1.3/sample_scripts/consistency_tests.py
1.3/sample_scripts/cv.py
1.3/sample_scripts/dasha.py
1.3/sample_scripts/diff_min.py
1.3/sample_scripts/jw_mapping.py
1.3/sample_scripts/map.py
1.3/sample_scripts/mf_multimodel.py
1.3/sample_scripts/model-free.py
1.3/sample_scripts/palmer.py
1.3/sample_scripts/remap.py
Modified: 1.3/sample_scripts/consistency_tests.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/consistency_tests.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/consistency_tests.py (original)
+++ 1.3/sample_scripts/consistency_tests.py Wed Oct 7 20:30:34 2009
@@ -28,7 +28,7 @@
pipe.create(name, 'ct')
# Load the sequence.
-sequence.read('noe.600.out')
+sequence.read('noe.600.out', res_num_col=1)
# Load the relaxation data.
relax_data.read('R1', '600', 600.0 * 1e6, 'r1.600.out')
Modified: 1.3/sample_scripts/cv.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/cv.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/cv.py (original)
+++ 1.3/sample_scripts/cv.py Wed Oct 7 20:30:34 2009
@@ -30,7 +30,7 @@
pipe.create(cv_pipes[i][j], 'mf')
# Load the sequence.
- sequence.read('noe.500.out')
+ sequence.read('noe.500.out', res_num_col=1)
# Create the calibration set by loading all relaxation data except
the index 'i'.
for k in xrange(len(ri_labels)):
Modified: 1.3/sample_scripts/dasha.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/dasha.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/dasha.py (original)
+++ 1.3/sample_scripts/dasha.py Wed Oct 7 20:30:34 2009
@@ -13,7 +13,7 @@
pipe.create(name, 'mf')
# Load the sequence.
- sequence.read('noe.500.out')
+ sequence.read('noe.500.out', res_num_col=1)
# Load a PDB file.
#structure.read_pdb('example.pdb')
Modified: 1.3/sample_scripts/diff_min.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/diff_min.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/diff_min.py (original)
+++ 1.3/sample_scripts/diff_min.py Wed Oct 7 20:30:34 2009
@@ -19,7 +19,7 @@
pipe.create(name, 'mf')
# Load the sequence.
- sequence.read('noe.500.out')
+ sequence.read('noe.500.out', res_num_col=1)
# Load a PDB file.
structure.read_pdb('example.pdb')
Modified: 1.3/sample_scripts/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/jw_mapping.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/jw_mapping.py (original)
+++ 1.3/sample_scripts/jw_mapping.py Wed Oct 7 20:30:34 2009
@@ -4,7 +4,7 @@
pipe.create('my_protein', 'jw')
# Load the sequence.
-sequence.read('noe.600.out')
+sequence.read('noe.600.out', res_num_col=1)
# Load the relaxation data.
relax_data.read('R1', '600', 600.0 * 1e6, 'r1.600.out')
Modified: 1.3/sample_scripts/map.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/map.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/map.py (original)
+++ 1.3/sample_scripts/map.py Wed Oct 7 20:30:34 2009
@@ -8,7 +8,7 @@
value.set('15N', 'heteronucleus')
# Load the sequence.
-sequence.read(name, 'noe.500.out')
+sequence.read(name, 'noe.500.out', res_num_col=1)
# Load the relaxation data.
relax_data.read(name, 'R1', '600', 600.0 * 1e6, 'r1.600.out')
Modified: 1.3/sample_scripts/mf_multimodel.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/mf_multimodel.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/mf_multimodel.py (original)
+++ 1.3/sample_scripts/mf_multimodel.py Wed Oct 7 20:30:34 2009
@@ -33,7 +33,7 @@
pipe.create(name, 'mf')
# Load the sequence.
- sequence.read('noe.500.out')
+ sequence.read('noe.500.out', res_num_col=1)
# Load a PDB file.
#structure.read_pdb('example.pdb')
Modified: 1.3/sample_scripts/model-free.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/model-free.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/model-free.py (original)
+++ 1.3/sample_scripts/model-free.py Wed Oct 7 20:30:34 2009
@@ -28,7 +28,7 @@
pipe.create(name, 'mf')
# Load the sequence.
-sequence.read('noe.500.out')
+sequence.read('noe.500.out', res_num_col=1)
# Load a PDB file.
#structure.read_pdb('example.pdb')
Modified: 1.3/sample_scripts/palmer.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/palmer.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/palmer.py (original)
+++ 1.3/sample_scripts/palmer.py Wed Oct 7 20:30:34 2009
@@ -49,7 +49,7 @@
pipe.create(name, 'mf')
# Load the sequence.
- sequence.read('noe.500.out')
+ sequence.read('noe.500.out', res_num_col=1)
# PDB.
#structure.read_pdb('Ap4Aase_new_3.pdb')
Modified: 1.3/sample_scripts/remap.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/remap.py?rev=9649&r1=9648&r2=9649&view=diff
==============================================================================
--- 1.3/sample_scripts/remap.py (original)
+++ 1.3/sample_scripts/remap.py Wed Oct 7 20:30:34 2009
@@ -32,7 +32,7 @@
pipe.create(name, 'mf')
# Load the sequence.
-sequence.read(name, 'noe.500.out')
+sequence.read(name, 'noe.500.out', res_num_col=1)
# Load the relaxation data.
relax_data.read(name, 'R1', '600', 600.0 * 1e6, 'r1.600.out')
r9649 - /1.3/sample_scripts/