Author: bugman
Date: Sun Oct 11 17:23:37 2009
New Revision: 9731
URL: http://svn.gna.org/viewcvs/relax?rev=9731&view=rev
Log:
Shifted the program info into module variables.
Modified:
branches/bmrb/generic_fns/exp_info.py
Modified: branches/bmrb/generic_fns/exp_info.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/generic_fns/exp_info.py?rev=9731&r1=9730&r2=9731&view=diff
==============================================================================
--- branches/bmrb/generic_fns/exp_info.py (original)
+++ branches/bmrb/generic_fns/exp_info.py Sun Oct 11 17:23:37 2009
@@ -26,6 +26,29 @@
# relax module imports.
from data.exp_info import ExpInfo
from relax_errors import RelaxError
+
+
+# relax fixed info.
+RELAX_NAME = "relax"
+RELAX_AUTHORS = "The relax development team"
+RELAX_REF = "d'Auvergne, E. J. and Gooley, P. R. (2008). Optimisation of
NMR dynamic models I. Minimisation algorithms and their performance within
the model-free and Brownian rotational diffusion spaces. J. Biomol. NMR,
40(2), 107-119; d'Auvergne, E. J. and Gooley, P. R. (2008). Optimisation of
NMR dynamic models II. A new methodology for the dual optimisation of the
model-free parameters and the Brownian rotational diffusion tensor. J.
Biomol. NMR, 40(2), 121-133."
+RELAX_URL = "http://nmr-relax.com";
+RELAX_TASKS = ["data processing"]
+
+# NMRPipe fixed info.
+NMRPIPE_NAME = "NMRPipe"
+NMRPIPE_AUTHORS = "Delaglio, F."
+NMRPIPE_REF = "Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer,
J., and Bax, A. (1995). NMRPipe: a multidimensional spectral processing
system based on UNIX pipes. J. Biomol. NMR. 6, 277-293."
+NMRPIPE_URL = "http://spin.niddk.nih.gov/NMRPipe/";
+NMRPIPE_TASKS = ["processing"]
+
+# Sparky fixed info.
+SPARKY_NAME = "Sparky"
+SPARKY_AUTHORS = "Goddard, T. D."
+SPARKY_REF = "Goddard, T. D. and Kneller, D. G., SPARKY 3, University of
California, San Francisco."
+SPARKY_URL = "http://www.cgl.ucsf.edu/home/sparky/";
+SPARKY_TASKS = ["spectral analysis"]
+
def bmrb_write_software(star):
@@ -85,11 +108,11 @@
# relax.
if name == 'relax':
- cdp.exp_info.software_setup(name='relax', version=version_full(),
vendor_name='The relax development team',
vendor_eaddress='http://nmr-relax.com', cite="d'Auvergne, E. J. and Gooley,
P. R. (2008). Optimisation of NMR dynamic models I. Minimisation algorithms
and their performance within the model-free and Brownian rotational diffusion
spaces. J. Biomol. NMR, 40(2), 107-119; d'Auvergne, E. J. and Gooley, P. R.
(2008). Optimisation of NMR dynamic models II. A new methodology for the
dual optimisation of the model-free parameters and the Brownian rotational
diffusion tensor. J. Biomol. NMR, 40(2), 121-133.", task='data processing')
+ cdp.exp_info.software_setup(name=RELAX_NAME, version=version_full(),
vendor_name=RELAX_AUTHORS, url=RELAX_URL, cite=RELAX_REF, tasks=RELAX_TASKS)
# NMRPipe.
if name == 'NMRPipe':
- cdp.exp_info.software_setup('NMRPipe', version=version,
url="http://spin.niddk.nih.gov/NMRPipe/";, vendor_name="Delaglio, F.",
cite="Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and
Bax, A. (1995). NMRPipe: a multidimensional spectral processing system based
on UNIX pipes. J. Biomol. NMR. 6, 277-293.", tasks=["processing"])
+ cdp.exp_info.software_setup(name=NMRPIPE_NAME, version=version,
vendor_name=NMRPIPE_AUTHORS, url=NMRPIPE_URL, cite=NMRPIPE_REF,
tasks=NMRPIPE_TASKS)
# Sparky.
elif name == 'Sparky':
@@ -98,4 +121,4 @@
raise RelaxError("The Sparky version number has not been
supplied.")
# Add the data.
- cdp.exp_info.software_setup('Sparky', version=version,
url="http://www.cgl.ucsf.edu/home/sparky/";, vendor_name="Goddard, T. D.",
cite="Goddard, T. D. and Kneller, D. G., SPARKY 3, University of California,
San Francisco.", tasks=["spectral analysis"])
+ cdp.exp_info.software_setup(name=SPARKY_NAME, version=version,
vendor_name=SPARKY_AUTHORS, url=SPARKY_URL, cite=SPARKY_REF,
tasks=SPARKY_TASKS)
r9731 - /branches/bmrb/generic_fns/exp_info.py