Author: bugman Date: Sun Oct 11 19:31:19 2009 New Revision: 9737 URL: http://svn.gna.org/viewcvs/relax?rev=9737&view=rev Log: The element (or atom type) info is being sent into bmrblib. Modified: branches/bmrb/specific_fns/model_free/bmrb.py Modified: branches/bmrb/specific_fns/model_free/bmrb.py URL: http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/model_free/bmrb.py?rev=9737&r1=9736&r2=9737&view=diff ============================================================================== --- branches/bmrb/specific_fns/model_free/bmrb.py (original) +++ branches/bmrb/specific_fns/model_free/bmrb.py Sun Oct 11 19:31:19 2009 @@ -91,6 +91,7 @@ csa_list = [] r_list = [] isotope_list = [] + element_list = [] s2_list = [] s2f_list = [] @@ -135,6 +136,7 @@ csa_list.append(spin.csa * 1e6) # In ppm. r_list.append(spin.r) isotope_list.append(int(string.strip(spin.heteronuc_type, string.ascii_letters))) + element_list.append(spin.element) # Model-free data. s2_list.append(spin.s2) @@ -181,7 +183,7 @@ ###################################################### # Generate the CSA saveframe. - star.chem_shift_anisotropy.add(res_nums=res_num_list, res_names=res_name_list, atom_names=atom_name_list, isotope=isotope_list, csa=csa_list) + star.chem_shift_anisotropy.add(res_nums=res_num_list, res_names=res_name_list, atom_names=atom_name_list, atom_type=element_list, isotope=isotope_list, csa=csa_list) # Create Supergroup 6 : The kinetic data saveframes. @@ -195,7 +197,7 @@ ###################################################### # Generate the model-free data saveframe. - star.order_parameters.add(res_nums=res_num_list, res_names=res_name_list, atom_names=atom_name_list, s2=s2_list, s2f=s2f_list, s2s=s2s_list, te=te_list, tf=tf_list, ts=ts_list, rex=rex_list, s2_err=s2_err_list, s2f_err=s2f_err_list, s2s_err=s2s_err_list, te_err=te_err_list, tf_err=tf_err_list, ts_err=ts_err_list, rex_err=rex_err_list, rex_frq=rex_frq, chi2=chi2_list) + star.order_parameters.add(res_nums=res_num_list, res_names=res_name_list, atom_names=atom_name_list, atom_type=element_list, s2=s2_list, s2f=s2f_list, s2s=s2s_list, te=te_list, tf=tf_list, ts=ts_list, rex=rex_list, s2_err=s2_err_list, s2f_err=s2f_err_list, s2s_err=s2s_err_list, te_err=te_err_list, tf_err=tf_err_list, ts_err=ts_err_list, rex_err=rex_err_list, rex_frq=rex_frq, chi2=chi2_list) # Write the contents to the STAR formatted file.