Author: bugman
Date: Fri Jan 15 13:00:52 2010
New Revision: 10239
URL: http://svn.gna.org/viewcvs/relax?rev=10239&view=rev
Log:
Merged revisions 10117,10157,10178-10188,10197,10204-10205 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
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r10117 | bugman | 2010-01-06 18:57:55 +0100 (Wed, 06 Jan 2010) | 6 lines
Modified the IO redirection methods.
The original IO streams are stored and then restore instead of
sys.__stdout__ and sys.__stderr__.
This might help in the multi-processor branch where IO redirection has gone
haywire.
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r10157 | bugman | 2010-01-08 10:57:41 +0100 (Fri, 08 Jan 2010) | 6 lines
Big bug fix for the model-free grid search!!!
The lower and upper bounds were being scaled iteratively for each spin
causing the values to be
ridiculously bigger and bigger. This caused a total failure of the grid
search.
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r10178 | bugman | 2010-01-12 13:20:36 +0100 (Tue, 12 Jan 2010) | 3 lines
Modified the import of euler_zyz_to_R to allow easy switching later on to a
different notation.
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r10179 | bugman | 2010-01-12 13:21:01 +0100 (Tue, 12 Jan 2010) | 3 lines
Copyright notice update.
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r10180 | bugman | 2010-01-12 13:32:12 +0100 (Tue, 12 Jan 2010) | 3 lines
Renamed all euler_ijk_to_R() functions to euler_to_R_ijk().
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r10181 | bugman | 2010-01-12 13:35:04 +0100 (Tue, 12 Jan 2010) | 3 lines
Ordered the euler angle conversion functions.
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r10182 | bugman | 2010-01-12 13:40:33 +0100 (Tue, 12 Jan 2010) | 3 lines
Fixes for all the euler angle to rotation matrix unit tests.
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r10183 | bugman | 2010-01-12 13:42:00 +0100 (Tue, 12 Jan 2010) | 3 lines
Fix for reverse_euler_zyz() due to the function renaming.
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r10184 | bugman | 2010-01-12 14:22:09 +0100 (Tue, 12 Jan 2010) | 3 lines
Created a unit test to check all hard-coded conversion functions for all 12
static axis rotations.
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r10185 | bugman | 2010-01-12 14:22:52 +0100 (Tue, 12 Jan 2010) | 3 lines
Fix for the euler_to_axis_angle_xzx() function.
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r10186 | bugman | 2010-01-12 15:10:54 +0100 (Tue, 12 Jan 2010) | 5 lines
Improvements to the test_euler_cycle_1() unit test.
This includes verbose printing of data structures and checking of the
rotation matrix at each cycle.
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r10187 | bugman | 2010-01-12 15:36:01 +0100 (Tue, 12 Jan 2010) | 5 lines
Added 12 unit tests for all notations of R -> Euler -> R.
This uses a random rotation matrix and sees if the matrix is returned.
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r10188 | bugman | 2010-01-12 15:39:31 +0100 (Tue, 12 Jan 2010) | 6 lines
Important bug fix for the R_to_euler() function.
The special angle wrapping when beta was negative is only for the ijk Euler
notation when i == k!
When i != k, another type of wrapping will be required.
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r10197 | bugman | 2010-01-13 15:15:37 +0100 (Wed, 13 Jan 2010) | 3 lines
Removed the alpha Euler angle from the isotropic code frame order model.
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r10204 | bugman | 2010-01-13 17:33:24 +0100 (Wed, 13 Jan 2010) | 5 lines
Bug fix for the frame order isotropic cone target function.
The optimised rotation matrix for the alignment tensor orientations was
being applied in reverse!!!
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r10205 | bugman | 2010-01-13 19:21:19 +0100 (Wed, 13 Jan 2010) | 6 lines
Reverted r10204 as this was a not a bug and the revision introduced a bug!!!
The command used was:
svn merge -r10204:10203 .
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Modified:
branches/bieri_gui/ (props changed)
branches/bieri_gui/maths_fns/frame_order.py
branches/bieri_gui/maths_fns/n_state_model.py
branches/bieri_gui/maths_fns/rotation_matrix.py
branches/bieri_gui/specific_fns/frame_order.py
branches/bieri_gui/specific_fns/model_free/mf_minimise.py
branches/bieri_gui/specific_fns/n_state_model.py
branches/bieri_gui/test_suite/relax_test_runner.py
branches/bieri_gui/test_suite/unit_tests/_maths_fns/test_rotation_matrix.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/bieri_gui/maths_fns/frame_order.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/maths_fns/frame_order.py?rev=10239&r1=10238&r2=10239&view=diff
Modified: branches/bieri_gui/maths_fns/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/maths_fns/n_state_model.py?rev=10239&r1=10238&r2=10239&view=diff
Modified: branches/bieri_gui/maths_fns/rotation_matrix.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/maths_fns/rotation_matrix.py?rev=10239&r1=10238&r2=10239&view=diff
Modified: branches/bieri_gui/specific_fns/frame_order.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/specific_fns/frame_order.py?rev=10239&r1=10238&r2=10239&view=diff
Modified: branches/bieri_gui/specific_fns/model_free/mf_minimise.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/specific_fns/model_free/mf_minimise.py?rev=10239&r1=10238&r2=10239&view=diff
Modified: branches/bieri_gui/specific_fns/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/specific_fns/n_state_model.py?rev=10239&r1=10238&r2=10239&view=diff
Modified: branches/bieri_gui/test_suite/relax_test_runner.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/test_suite/relax_test_runner.py?rev=10239&r1=10238&r2=10239&view=diff
Modified:
branches/bieri_gui/test_suite/unit_tests/_maths_fns/test_rotation_matrix.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/test_suite/unit_tests/_maths_fns/test_rotation_matrix.py?rev=10239&r1=10238&r2=10239&view=diff
r10239 - in /branches/bieri_gui: ./ maths_fns/ specific_fns/ specific_fns/model_free/ test_suite/ test_suite/unit_tests/_mat...