r10632 - in /branches/bieri_gui: ./ maths_fns/ prompt/ specific_fns/ -- February 03, 2010 - 18:29

Author: bugman
Date: Wed Feb  3 18:29:39 2010
New Revision: 10632

URL: http://svn.gna.org/viewcvs/relax?rev=10632&view=rev
Log:
Merged revisions 10611-10612,10626-10631 via svnmerge from 
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3

........
  r10611 | bugman | 2010-02-01 23:36:57 +0100 (Mon, 01 Feb 2010) | 5 lines
  
  Bug fix for the running of the test suite.
  
  The interpreter _on() and _off() methods are now called on() and off()!
........
  r10612 | bugman | 2010-02-02 00:19:55 +0100 (Tue, 02 Feb 2010) | 3 lines
  
  Switched from using a cone angle to using an order parameter in the 
isotropic cone frame order model.
........
  r10626 | bugman | 2010-02-03 11:22:00 +0100 (Wed, 03 Feb 2010) | 5 lines
  
  Added the stub function 
maths_fns.order_parameters.iso_cone_S_to_cos_theta().
  
  This will be used to convert the order parameter S into the cosine of the 
cone angle.
........
  r10627 | bugman | 2010-02-03 18:00:17 +0100 (Wed, 03 Feb 2010) | 16 lines
  
  Redesigned get_intro_string() to return a container of different strings.
  
  The method is now called get_intro_text() and returns a container with the 
following str objects:
      - title:  The program title 'relax'
      - version:  For example 'repository checkout' or '1.3.8'.
      - desc:  The short program description.
      - copyright:  A list of copyright statements.
      - licence:  Text pertaining to the licencing.
      - errors:  A list of import errors.
  
  This is being abstracted so that the different UIs can use this 
differently.  The prompt/script can
  word wrap to 100 char (80 char in Windows), and print this to stdout.  The 
GUI can use this in the
  about prompt and not print to stdout.  Other interfaces can use this in any 
other way.  And the
  information content can be expanded for different purposes.
........
  r10628 | bugman | 2010-02-03 18:09:01 +0100 (Wed, 03 Feb 2010) | 6 lines
  
  Shifted the introductory text object into its own module.
  
  This makes the use of this object more flexible as anything and any part of 
the program can import
  it. 
........
  r10629 | bugman | 2010-02-03 18:15:59 +0100 (Wed, 03 Feb 2010) | 5 lines
  
  Shifted the spacing() method from relax to the intro module and renamed it 
to centre().
  
  The docstring has also been expanded to include epydoc tags.
........
  r10630 | bugman | 2010-02-03 18:26:28 +0100 (Wed, 03 Feb 2010) | 6 lines
  
  The introductory text for the prompt/script based interface is now 
recreated.
  
  The _build_intro_text() method has been added to replicate the formatting 
of the deleted
  get_intro_text() method of the main relax class.  This formatting is only 
to be used in these 2 UIs.
........
  r10631 | bugman | 2010-02-03 18:28:49 +0100 (Wed, 03 Feb 2010) | 7 lines
  
  Changed the program description again.
  
  The program is now described as "Molecular dynamics by NMR data analysis".  
This takes into account
  that this is for proteins, RNA, DNA, organic molecules, sugars, etc., and 
for relaxation data, RDCs,
  PCSs, NOEs, and all NMR data.
........

Added:
    branches/bieri_gui/intro.py
      - copied unchanged from r10631, 1.3/intro.py
    branches/bieri_gui/maths_fns/order_parameters.py
      - copied unchanged from r10631, 1.3/maths_fns/order_parameters.py
Modified:
    branches/bieri_gui/   (props changed)
    branches/bieri_gui/maths_fns/__init__.py
    branches/bieri_gui/maths_fns/frame_order.py
    branches/bieri_gui/maths_fns/frame_order_matrix_ops.py
    branches/bieri_gui/prompt/interpreter.py
    branches/bieri_gui/relax
    branches/bieri_gui/specific_fns/frame_order.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: branches/bieri_gui/maths_fns/__init__.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/maths_fns/__init__.py?rev=10632&r1=10631&r2=10632&view=diff

Modified: branches/bieri_gui/maths_fns/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/maths_fns/frame_order.py?rev=10632&r1=10631&r2=10632&view=diff

Modified: branches/bieri_gui/maths_fns/frame_order_matrix_ops.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/maths_fns/frame_order_matrix_ops.py?rev=10632&r1=10631&r2=10632&view=diff

Modified: branches/bieri_gui/prompt/interpreter.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/prompt/interpreter.py?rev=10632&r1=10631&r2=10632&view=diff

Modified: branches/bieri_gui/relax
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/relax?rev=10632&r1=10631&r2=10632&view=diff

Modified: branches/bieri_gui/specific_fns/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/specific_fns/frame_order.py?rev=10632&r1=10631&r2=10632&view=diff