Author: bugman
Date: Tue Feb 23 18:22:36 2010
New Revision: 10863
URL: http://svn.gna.org/viewcvs/relax?rev=10863&view=rev
Log:
Merged revisions 10845-10860,10862 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
........
r10845 | bugman | 2010-02-23 11:15:31 +0100 (Tue, 23 Feb 2010) | 5 lines
Added a 6th stage to the stereochemistry analysis script.
This is the ordering of all ensembles using a combined Q-factor.
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r10846 | bugman | 2010-02-23 11:18:32 +0100 (Tue, 23 Feb 2010) | 3 lines
Added a check for the stage number in the stereochemistry auto analysis.
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r10847 | bugman | 2010-02-23 11:43:47 +0100 (Tue, 23 Feb 2010) | 5 lines
Stage 6, the combined Q-factor and final ordering is now complete.
The combined_q() method was written to perform this last analysis.
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r10848 | bugman | 2010-02-23 13:29:04 +0100 (Tue, 23 Feb 2010) | 5 lines
The modules are no longer deleted after import from dep_check.
This will allow dep_check to be used for extracting package information by
the Info_box.
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r10849 | bugman | 2010-02-23 13:44:08 +0100 (Tue, 23 Feb 2010) | 3 lines
Added checks for the bmrblib and Numeric packages.
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r10850 | bugman | 2010-02-23 13:49:32 +0100 (Tue, 23 Feb 2010) | 3 lines
Added a specific import check for Scientific - the other checking the PDB
module import.
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r10851 | bugman | 2010-02-23 13:52:53 +0100 (Tue, 23 Feb 2010) | 3 lines
Added a check for the wx module.
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r10852 | bugman | 2010-02-23 13:54:49 +0100 (Tue, 23 Feb 2010) | 3 lines
Added a check for the mpi4py module.
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r10853 | bugman | 2010-02-23 13:55:24 +0100 (Tue, 23 Feb 2010) | 3 lines
Made the mpi4py import flag more consistent.
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r10854 | bugman | 2010-02-23 14:05:49 +0100 (Tue, 23 Feb 2010) | 3 lines
Added an import check for epydoc.
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r10855 | bugman | 2010-02-23 14:20:57 +0100 (Tue, 23 Feb 2010) | 3 lines
Imported os in the os.devnull import check, and deleted devnull.
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r10856 | bugman | 2010-02-23 14:23:45 +0100 (Tue, 23 Feb 2010) | 5 lines
Redesigned package_info() to remove the dependence on the pkg_resources
module.
This was a problem in many old python versions. The package info is now
presented in a table.
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r10857 | bugman | 2010-02-23 14:27:27 +0100 (Tue, 23 Feb 2010) | 3 lines
Added the relax C module compilation info.
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r10858 | bugman | 2010-02-23 14:28:33 +0100 (Tue, 23 Feb 2010) | 3 lines
The version-less modules now have an empty string for the version printed.
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r10859 | bugman | 2010-02-23 14:34:47 +0100 (Tue, 23 Feb 2010) | 6 lines
Made Info_box.sys_info() fault tolerant.
All the contents of the platform module are checked before added the text,
allowing for older python
versions.
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r10860 | bugman | 2010-02-23 16:06:48 +0100 (Tue, 23 Feb 2010) | 17 lines
A python 3.0 fix for the grace module.
The command used was:
2to3 -w \
> -f buffer \
> -f idioms \
> -f set_literal \
> -f ws_comma \
> -x except \
> -x import \
> -x imports \
> -x long \
> -x numliterals \
> -x xrange \
> relax .
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r10862 | bugman | 2010-02-23 18:20:45 +0100 (Tue, 23 Feb 2010) | 5 lines
Converted the Info_box into a singleton.
This will allow for execution specific info to be placed in here and
accessed by all.
........
Modified:
branches/multi_processor_merge/ (props changed)
branches/multi_processor_merge/auto_analyses/stereochem_analysis.py
branches/multi_processor_merge/dep_check.py
branches/multi_processor_merge/generic_fns/grace.py
branches/multi_processor_merge/info.py
branches/multi_processor_merge/sample_scripts/stereochem_analysis.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/multi_processor_merge/auto_analyses/stereochem_analysis.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/auto_analyses/stereochem_analysis.py?rev=10863&r1=10862&r2=10863&view=diff
Modified: branches/multi_processor_merge/dep_check.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/dep_check.py?rev=10863&r1=10862&r2=10863&view=diff
Modified: branches/multi_processor_merge/generic_fns/grace.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/generic_fns/grace.py?rev=10863&r1=10862&r2=10863&view=diff
Modified: branches/multi_processor_merge/info.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/info.py?rev=10863&r1=10862&r2=10863&view=diff
Modified: branches/multi_processor_merge/sample_scripts/stereochem_analysis.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_processor_merge/sample_scripts/stereochem_analysis.py?rev=10863&r1=10862&r2=10863&view=diff
r10863 - in /branches/multi_processor_merge: ./ auto_analyses/ generic_fns/ sample_scripts/