Author: bugman
Date: Wed Feb 24 00:12:17 2010
New Revision: 10879
URL: http://svn.gna.org/viewcvs/relax?rev=10879&view=rev
Log:
Expanded the references to include a number of new variables.
These include 'type', 'status', 'journal_full', and 'author2'. These will be
used mainly in the
BMRB branch.
Modified:
1.3/info.py
Modified: 1.3/info.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/info.py?rev=10879&r1=10878&r2=10879&view=diff
==============================================================================
--- 1.3/info.py (original)
+++ 1.3/info.py Wed Feb 24 00:12:17 2010
@@ -486,14 +486,17 @@
class Clore90(Ref):
"""Bibliography container."""
+ type = "journal"
author = "Clore, G. M. and Szabo, A. and Bax, A. and Kay, L. E.
and Driscoll, P. C. and Gronenborn, A. M."
title = "Deviations from the simple 2-parameter model-free
approach to the interpretation of N-15 nuclear magnetic-relaxation of
proteins"
journal = "J. Am. Chem. Soc."
+ journal_full = "Journal of the American Chemical Society"
volume = "112"
number = "12"
pages = "4989-4991"
address = "1155 16th St, NW, Washington, DC 20036"
sourceid = "ISI:A1990DH27700070"
+ status = "published"
year = 1990
@@ -501,10 +504,13 @@
class dAuvergne06(Ref):
"""Bibliography container."""
+ type = "thesis"
author = "d'Auvergne, E. J."
+ author2 = [["Edward", "d'Auvergne", "E.", "J."]]
title = "Protein dynamics: a study of the model-free analysis
of NMR relaxation data."
school = "Biochemistry and Molecular Biology, University of
Melbourne."
url =
"http://eprints.infodiv.unimelb.edu.au/archive/00002799/";
+ status = "published"
year = 2006
@@ -512,9 +518,12 @@
class dAuvergneGooley03(Ref):
"""Bibliography container."""
+ type = "journal"
author = "d'Auvergne, E. J. and Gooley, P. R."
+ author2 = [["Edward", "d'Auvergne", "E.", "J."], ["Paul",
"Gooley", "P.", "R."]]
title = "The use of model selection in the model-free analysis
of protein dynamics."
journal = "J. Biomol. NMR"
+ journal_full = "Journal of Biomolecular NMR"
volume = "25"
number = "1"
pages = "25-39"
@@ -523,6 +532,7 @@
keywords = "Amines ; Diffusion ; *Models, Molecular ; Motion ;
Nuclear Magnetic Resonance, Biomolecular/*methods ; Proteins/*chemistry ;
Research Support, Non-U.S. Gov't ; Rotation"
doi = "10.1023/A:1021902006114"
pubmed_id = 12566997
+ status = "published"
year = 2003
@@ -530,9 +540,12 @@
class dAuvergneGooley06(Ref):
"""Bibliography container."""
+ type = "journal"
author = "d'Auvergne, E. J. and Gooley, P. R."
+ author2 = [["Edward", "d'Auvergne", "E.", "J."], ["Paul",
"Gooley", "P.", "R."]]
title = "Model-free model elimination: A new step in the
model-free dynamic analysis of NMR relaxation data."
journal = "J. Biomol. NMR"
+ journal_full = "Journal of Biomolecular NMR"
volume = "35"
number = "2"
pages = "117-135"
@@ -540,6 +553,7 @@
authoraddress = "Department of Biochemistry and Molecular Biology,
Bio21 Institute of Biotechnology and Molecular Science, University of
Melbourne, Parkville, Victoria, 3010, Australia"
doi = "10.1007/s10858-006-9007-z"
pubmed_id = 16791734
+ status = "published"
year = 2006
@@ -547,9 +561,12 @@
class dAuvergneGooley07(Ref):
"""Bibliography container."""
+ type = "journal"
author = "d'Auvergne, E. J. and Gooley, P. R."
+ author2 = [["Edward", "d'Auvergne", "E.", "J."], ["Paul",
"Gooley", "P.", "R."]]
title = "Set theory formulation of the model-free problem and
the diffusion seeded model-free paradigm."
journal = "Mol. Biosys."
+ journal_full = "Molecular BioSystems"
volume = "3"
number = "7"
pages = "483-494"
@@ -558,6 +575,7 @@
keywords = "Magnetic Resonance Spectroscopy/*methods ; *Models,
Theoretical ; Proteins/chemistry ; Thermodynamics"
doi = "10.1039/b702202f"
pubmed_id = 17579774
+ status = "published"
year = 2007
@@ -565,9 +583,12 @@
class dAuvergneGooley08a(Ref):
"""Bibliography container."""
+ type = "journal"
author = "d'Auvergne, E. J. and Gooley, P. R."
+ author2 = [["Edward", "d'Auvergne", "E.", "J."], ["Paul",
"Gooley", "P.", "R."]]
title = "Optimisation of NMR dynamic models I. Minimisation
algorithms and their performance within the model-free and Brownian
rotational diffusion spaces."
journal = "J. Biomol. NMR"
+ journal_full = "Journal of Biomolecular NMR"
volume = "40"
number = "2"
pages = "107-119"
@@ -576,6 +597,7 @@
keywords = "*Algorithms ; Cytochromes c2/chemistry ; Diffusion ;
*Models, Molecular ; Nuclear Magnetic Resonance, Biomolecular/*methods ;
Rhodobacter capsulatus/chemistry ; *Rotation"
doi = "10.1007/s10858-007-9214-2"
pubmed_id = 18085410
+ status = "published"
year = 2008
@@ -583,9 +605,12 @@
class dAuvergneGooley08b(Ref):
"""Bibliography container."""
+ type = "journal"
author = "d'Auvergne, E. J. and Gooley, P. R."
+ author2 = [["Edward", "d'Auvergne", "E.", "J."], ["Paul",
"Gooley", "P.", "R."]]
title = "Optimisation of NMR dynamic models II. A new
methodology for the dual optimisation of the model-free parameters and the
Brownian rotational diffusion tensor."
journal = "J. Biomol. NMR"
+ journal_full = "Journal of Biomolecular NMR"
volume = "40"
number = "2"
pages = "121-133"
@@ -595,6 +620,7 @@
language = "eng"
doi = "10.1007/s10858-007-9213-3"
pubmed_id = 18085411
+ status = "published"
year = 2008
@@ -602,14 +628,17 @@
class LipariSzabo82a(Ref):
"""Bibliography container."""
+ type = "journal"
author = "Lipari, G. and Szabo, A."
title = "Model-free approach to the interpretation of nuclear
magnetic-resonance relaxation in macromolecules I. Theory and range of
validity"
journal = "J. Am. Chem. Soc."
+ journal_full = "Journal of the American Chemical Society"
volume = "104"
number = "17"
pages = "4546-4559"
authoraddress = "NIADDKD,Chem Phys Lab,Bethesda,MD 20205."
sourceid = "ISI:A1982PC82900009"
+ status = "published"
year = 1982
@@ -617,13 +646,16 @@
class LipariSzabo82b(Ref):
"""Bibliography container."""
+ type = "journal"
author = "Lipari, G. and Szabo, A."
title = "Model-free approach to the interpretation of nuclear
magnetic-resonance relaxation in macromolecules II. Analysis of experimental
results"
journal = "J. Am. Chem. Soc."
+ journal_full = "Journal of the American Chemical Society"
volume = "104"
number = "17"
pages = "4559-4570"
abstract = "For pt.I see ibid., vol.104, p.4546 (1982). In the
preceding paper it has been shown that the unique dynamic information on fast
internal motions in an NMR relaxation experiment on macromolecules in
solution is specified by a generalized order parameter, S , and an effective
correlation time, tau /sub e/. The authors now deal with the extraction and
interpretation of this information. The procedure used to obtain S /sup 2/
and tau /sub e/ from experimental data by using a least-squares method and,
in certain favorable circumstances, by using an analytical formula is
described. A variety of experiments are then analyzed to yield information on
the time scale and spatial restriction of internal motions of isoleucines in
myoglobin, methionines in dihydrofolate reductase and myoglobin, a number of
aliphatic residues in basic pancreatic trypsin inhibitor, and ethyl
isocyanide bound to myoglobin, hemoglobin, and aliphatic side chains in three
random-coil polymers. The numerical values of S /sup 2/ and tau /sub e / can
be readily interpreted within the framework of a variety of models."
authoraddress = "NIADDKD,Chem Phys Lab,Bethesda,MD 20205."
sourceid = "ISI:A1982PC82900010"
+ status = "published"
year = 1982
r10879 - /1.3/info.py