r11100 - in /branches/bieri_gui: ./ generic_fns/ prompt/ specific_fns/ test_suite/shared_data/pcs_data/ test_suite/shared_da... -- April 22, 2010 - 03:39

Author: michaelbieri
Date: Thu Apr 22 03:39:54 2010
New Revision: 11100

URL: http://svn.gna.org/viewcvs/relax?rev=11100&view=rev
Log:
Merged revisions 11087-11099 via svnmerge from 
svn+ssh://michaelbieri@xxxxxxxxxxx/svn/relax/1.3

........
  r11087 | bugman | 2010-04-20 19:44:35 +1000 (Die, 20 Apr 2010) | 5 lines
  
  Added some calls to value.display() and value.write().
  
  This demonstrates the failure of these user functions!
........
  r11088 | bugman | 2010-04-20 19:46:14 +1000 (Die, 20 Apr 2010) | 5 lines
  
  Fix for 3 of the 'value' user functions.
  
  These were calling the non-existent self.__relax__.
........
  r11089 | bugman | 2010-04-20 19:47:52 +1000 (Die, 20 Apr 2010) | 5 lines
  
  Fix for the molmol.clear_history() user function.
  
  This was calling the non-existent self.__relax__ structure.
........
  r11090 | bugman | 2010-04-20 21:49:47 +1000 (Die, 20 Apr 2010) | 3 lines
  
  Wrote the back end for the rdc.display() and rdc.write() user functions.
........
  r11091 | bugman | 2010-04-20 22:42:53 +1000 (Die, 20 Apr 2010) | 3 lines
  
  Wrote the back end for the pcs.display() and pcs.write() user functions.
........
  r11092 | bugman | 2010-04-21 19:00:41 +1000 (Mit, 21 Apr 2010) | 3 lines
  
  Added 2 system tests for alignment tensor optimisation using DNA PCS data.
........
  r11093 | bugman | 2010-04-21 20:22:09 +1000 (Mit, 21 Apr 2010) | 5 lines
  
  Clean up of the RDC and PCS modules.
  
  All the residual code from the relax_data module has been eliminated.
........
  r11094 | bugman | 2010-04-21 22:22:15 +1000 (Mit, 21 Apr 2010) | 5 lines
  
  Added a call to pcs.display() in the DNA PCS system test.
  
  This is to test out the operation of this user function.
........
  r11095 | bugman | 2010-04-21 23:37:04 +1000 (Mit, 21 Apr 2010) | 3 lines
  
  Fix for the RDC and PCS display() and write() user functions for when no 
errors exist.
........
  r11096 | bugman | 2010-04-21 23:38:59 +1000 (Mit, 21 Apr 2010) | 5 lines
  
  Docstring fix for the read() function.
  
  This is the PCS, not RDC.
........
  r11097 | bugman | 2010-04-21 23:39:50 +1000 (Mit, 21 Apr 2010) | 3 lines
  
  Removal of a few unused imports.
........
  r11098 | bugman | 2010-04-22 01:52:06 +1000 (Don, 22 Apr 2010) | 5 lines
  
  Added calls to rdc.display() and pcs.display() to the lactose N-state model 
system test.
  
  This adds more checks for these user functions.
........
  r11099 | bugman | 2010-04-22 03:14:32 +1000 (Don, 22 Apr 2010) | 5 lines
  
  Converted the spin RDC and PCS data structures to dictionaries using 
align_id as a key.
  
  This is a big structural update which solves many problems with incomplete 
data.
........

Added:
    branches/bieri_gui/test_suite/shared_data/pcs_data/
      - copied from r11099, 1.3/test_suite/shared_data/pcs_data/
    branches/bieri_gui/test_suite/shared_data/structures/dna/
      - copied from r11099, 1.3/test_suite/shared_data/structures/dna/
    
branches/bieri_gui/test_suite/system_tests/scripts/n_state_model/dna_pcs_fit.py
      - copied unchanged from r11099, 
1.3/test_suite/system_tests/scripts/n_state_model/dna_pcs_fit.py
Modified:
    branches/bieri_gui/   (props changed)
    branches/bieri_gui/generic_fns/pcs.py
    branches/bieri_gui/generic_fns/rdc.py
    branches/bieri_gui/prompt/molmol.py
    branches/bieri_gui/prompt/value.py
    branches/bieri_gui/specific_fns/n_state_model.py
    branches/bieri_gui/test_suite/system_tests/n_state_model.py
    
branches/bieri_gui/test_suite/system_tests/scripts/n_state_model/lactose_n_state.py
    
branches/bieri_gui/test_suite/system_tests/scripts/opt_setup_S2_0_970_te_2048_Rex_0_149.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: branches/bieri_gui/generic_fns/pcs.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/generic_fns/pcs.py?rev=11100&r1=11099&r2=11100&view=diff

Modified: branches/bieri_gui/generic_fns/rdc.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/generic_fns/rdc.py?rev=11100&r1=11099&r2=11100&view=diff

Modified: branches/bieri_gui/prompt/molmol.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/prompt/molmol.py?rev=11100&r1=11099&r2=11100&view=diff

Modified: branches/bieri_gui/prompt/value.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/prompt/value.py?rev=11100&r1=11099&r2=11100&view=diff

Modified: branches/bieri_gui/specific_fns/n_state_model.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/specific_fns/n_state_model.py?rev=11100&r1=11099&r2=11100&view=diff

Modified: branches/bieri_gui/test_suite/system_tests/n_state_model.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/test_suite/system_tests/n_state_model.py?rev=11100&r1=11099&r2=11100&view=diff

Modified: 
branches/bieri_gui/test_suite/system_tests/scripts/n_state_model/lactose_n_state.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/test_suite/system_tests/scripts/n_state_model/lactose_n_state.py?rev=11100&r1=11099&r2=11100&view=diff

Modified: 
branches/bieri_gui/test_suite/system_tests/scripts/opt_setup_S2_0_970_te_2048_Rex_0_149.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/test_suite/system_tests/scripts/opt_setup_S2_0_970_te_2048_Rex_0_149.py?rev=11100&r1=11099&r2=11100&view=diff