r11276 - /1.3/prompt/paramag.py -- July 02, 2010 - 10:54

Author: bugman
Date: Fri Jul  2 10:54:49 2010
New Revision: 11276

URL: http://svn.gna.org/viewcvs/relax?rev=11276&view=rev
Log:
A few fixes for the paramag prompt code for the change from the PCS.


Modified:
    1.3/prompt/paramag.py

Modified: 1.3/prompt/paramag.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/prompt/paramag.py?rev=11276&r1=11275&r2=11276&view=diff
==============================================================================
--- 1.3/prompt/paramag.py (original)
+++ 1.3/prompt/paramag.py Fri Jul  2 10:54:49 2010
@@ -31,7 +31,7 @@
 from relax_errors import RelaxError
 
 
-class PCS(User_fn_class):
+class Paramag(User_fn_class):
     """Class for handling paramagnetic information."""
 
     def centre(self, pos=None, atom_id=None, pipe=None, verbosity=1, 
fix=True, ave_pos=True, force=False):
@@ -52,7 +52,7 @@
 
         ave_pos:  A flag specifying if the position of the atom is to be 
averaged across all models.
 
-        force:  A flag which if True will cause the current PCS centre to be 
overwritten.
+        force:  A flag which if True will cause the current paramagnetic 
centre to be overwritten.
 
 
         Description
@@ -68,9 +68,9 @@
 
         If the ave_pos flag is set to True, the average position from all 
models will be used as the
         position of the paramagnetic centre.  If False, then the positions 
from all structures will
-        be used.  If multiple positions are used, then a fast PCS centre 
motion will be assumed so
-        that PCSs for a single tensor will be calculated for each position, 
and the PCS values
-        linearly averaged.
+        be used.  If multiple positions are used, then a fast paramagnetic 
centre motion will be
+        assumed so that PCSs for a single tensor will be calculated for each 
position, and the PCS
+        values linearly averaged.
 
 
         Examples
@@ -79,27 +79,27 @@
         If the paramagnetic centre is the lanthanide Dysprosium which is 
labelled as Dy in a loaded
         PDB file, then type one of:
 
-        relax> pcs.centre('Dy')
-        relax> pcs.centre(atom_id='Dy')
+        relax> paramag.centre('Dy')
+        relax> paramag.centre(atom_id='Dy')
 
         If the carbon atom 'C1' of residue '4' in the PDB file is to be used 
as the paramagnetic
         centre, then type:
 
-        relax> pcs.centre(':4@C1')
+        relax> paramag.centre(':4@C1')
         
         To state that the Dy3+ atomic position is [0.136, 12.543, 4.356], 
type one of:
 
-        relax> pcs.centre([0.136, 12.543, 4.356])
-        relax> pcs.centre(pos=[0.136, 12.543, 4.356])
+        relax> paramag.centre([0.136, 12.543, 4.356])
+        relax> paramag.centre(pos=[0.136, 12.543, 4.356])
 
         To find an unknown paramagnetic centre, type:
 
-        relax> pcs.centre(fix=False)
+        relax> paramag.centre(fix=False)
         """
 
         # Function intro text.
         if self._exec_info.intro:
-            text = self._exec_info.ps3 + "pcs.centre("
+            text = self._exec_info.ps3 + "paramag.centre("
             text = text + "pos=" + repr(pos)
             text = text + ", atom_id=" + repr(atom_id)
             text = text + ", pipe=" + repr(pipe)