Author: bugman
Date: Wed Oct 6 18:39:32 2010
New Revision: 11630
URL: http://svn.gna.org/viewcvs/relax?rev=11630&view=rev
Log:
Merged revisions
11552,11565,11567,11571-11572,11574,11587-11588,11591,11594,11597,11607,11609,11618,11627-11628
via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
........
r11552 | bugman | 2010-09-14 16:34:11 +0200 (Tue, 14 Sep 2010) | 3 lines
Created a directory for relax graphics. The first files here are the relax
logo and icons.
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r11565 | bugman | 2010-09-15 19:36:15 +0200 (Wed, 15 Sep 2010) | 3 lines
The Ref.cite_html() method can now handle missing data.
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r11567 | bugman | 2010-09-15 19:43:22 +0200 (Wed, 15 Sep 2010) | 3 lines
Ref.cite_html() no longer adds the DOI web address in front of normal web
links!
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r11571 | bugman | 2010-09-16 09:59:26 +0200 (Thu, 16 Sep 2010) | 3 lines
Initialised the reference for the relax GUI paper.
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r11572 | bugman | 2010-09-16 10:00:23 +0200 (Thu, 16 Sep 2010) | 3 lines
Fix for the Bieri et al. ref.
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r11574 | bugman | 2010-09-16 10:06:47 +0200 (Thu, 16 Sep 2010) | 3 lines
Citations now include the status if not 'published'.
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r11587 | bugman | 2010-09-16 18:20:20 +0200 (Thu, 16 Sep 2010) | 3 lines
Renamed the results_folder arg to results_dir in the NOE auto-analysis, and
rearranged the args.
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r11588 | bugman | 2010-09-16 18:22:30 +0200 (Thu, 16 Sep 2010) | 5 lines
Added a system test for the dauvergne_protocol auto-analysis code.
The test is not yet functional.
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r11591 | bugman | 2010-09-16 19:17:33 +0200 (Thu, 16 Sep 2010) | 6 lines
Modified the specific code API to remove a number of references to spin_id.
Some analysis types do not work on spins, so the spin_id args are being
replaced by data_id to
identify the data requested. For most methods, this will be the spin_id.
........
r11594 | bugman | 2010-09-17 10:06:20 +0200 (Fri, 17 Sep 2010) | 3 lines
Shifted the debug and pedantic flags into the __main__ namespace for better
access from other modules.
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r11597 | bugman | 2010-09-17 10:30:22 +0200 (Fri, 17 Sep 2010) | 3 lines
Some fixes for the NOE auto-analysis.
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r11607 | bugman | 2010-09-17 15:57:10 +0200 (Fri, 17 Sep 2010) | 3 lines
Fix for the NOE auto-analysis - the spins are now named to the value of the
'heteronuc' arg.
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r11609 | bugman | 2010-09-17 18:02:20 +0200 (Fri, 17 Sep 2010) | 5 lines
Shifted the NOE specific analysis code into its own package.
This is in preparation for splitting up the module and adding new modules.
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r11618 | bugman | 2010-09-29 15:26:50 +0200 (Wed, 29 Sep 2010) | 3 lines
Added a catch for no data in the error analysis by replicated spectra.
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r11627 | bugman | 2010-10-06 12:46:39 +0200 (Wed, 06 Oct 2010) | 3 lines
Added some checks to the dauvergne_protocol mf analysis for the required
previously optimised results.
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r11628 | bugman | 2010-10-06 12:47:20 +0200 (Wed, 06 Oct 2010) | 3 lines
pipe.delete() without args will now delete all data pipes.
........
Added:
branches/bmrb/graphics/
- copied from r11628, 1.3/graphics/
branches/bmrb/specific_fns/noe/
- copied from r11628, 1.3/specific_fns/noe/
branches/bmrb/test_suite/shared_data/relaxation_data/13259_bug_reproducing_data/
- copied from r11628,
1.3/test_suite/shared_data/relaxation_data/13259_bug_reproducing_data/
branches/bmrb/test_suite/system_tests/scripts/model_free/full_analysis_trunc.py
- copied unchanged from r11628,
1.3/test_suite/system_tests/scripts/model_free/full_analysis_trunc.py
Removed:
branches/bmrb/specific_fns/noe.py
Modified:
branches/bmrb/ (props changed)
branches/bmrb/auto_analyses/dauvergne_protocol.py
branches/bmrb/auto_analyses/noe.py
branches/bmrb/generic_fns/pipes.py
branches/bmrb/generic_fns/spectrum.py
branches/bmrb/info.py
branches/bmrb/prompt/interpreter.py
branches/bmrb/relax
branches/bmrb/relax_errors.py
branches/bmrb/relax_warnings.py
branches/bmrb/specific_fns/api_base.py
branches/bmrb/specific_fns/api_common.py
branches/bmrb/specific_fns/consistency_tests.py
branches/bmrb/specific_fns/frame_order.py
branches/bmrb/specific_fns/jw_mapping.py
branches/bmrb/specific_fns/model_free/main.py
branches/bmrb/specific_fns/relax_fit.py
branches/bmrb/test_suite/system_tests/model_free.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/bmrb/auto_analyses/dauvergne_protocol.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/auto_analyses/dauvergne_protocol.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/auto_analyses/noe.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/auto_analyses/noe.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/generic_fns/pipes.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/generic_fns/pipes.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/generic_fns/spectrum.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/generic_fns/spectrum.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/info.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/info.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/prompt/interpreter.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/prompt/interpreter.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/relax
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/relax?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/relax_errors.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/relax_errors.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/relax_warnings.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/relax_warnings.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/specific_fns/api_base.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/api_base.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/specific_fns/api_common.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/api_common.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/specific_fns/consistency_tests.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/consistency_tests.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/specific_fns/frame_order.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/frame_order.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/specific_fns/jw_mapping.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/jw_mapping.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/specific_fns/model_free/main.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/model_free/main.py?rev=11630&r1=11629&r2=11630&view=diff
Removed: branches/bmrb/specific_fns/noe.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/noe.py?rev=11629&view=auto
Modified: branches/bmrb/specific_fns/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/specific_fns/relax_fit.py?rev=11630&r1=11629&r2=11630&view=diff
Modified: branches/bmrb/test_suite/system_tests/model_free.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/model_free.py?rev=11630&r1=11629&r2=11630&view=diff
r11630 - in /branches/bmrb: ./ auto_analyses/ generic_fns/ graphics/ prompt/ specific_fns/ specific_fns/model_free/ specific...