r11887 - in /branches/bieri_gui: ./ generic_fns/structure/internal.py -- December 17, 2010 - 20:16

Author: bugman
Date: Fri Dec 17 20:16:29 2010
New Revision: 11887

URL: http://svn.gna.org/viewcvs/relax?rev=11887&view=rev
Log:
Merged revisions 11886 via svnmerge from 
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3

........
  r11886 | bugman | 2010-12-17 19:59:11 +0100 (Fri, 17 Dec 2010) | 9 lines
  
  Fix for bug #17343 (https://gna.org/bugs/?17343).
  
  This bug was reported by Vitaly Vostri <vvostri att gmail dott com>, also 
in the mailing list
  message https://mail.gna.org/public/relax-users/2010-12/msg00005.html.
  
  The 'CH2' and 'OT' atoms have been added to the internal PDB reader, for 
those incomplete PDB files
  in which the element column is missing.
........

Modified:
    branches/bieri_gui/   (props changed)
    branches/bieri_gui/generic_fns/structure/internal.py

Propchange: branches/bieri_gui/
------------------------------------------------------------------------------
--- svnmerge-integrated (original)
+++ svnmerge-integrated Fri Dec 17 20:16:29 2010
@@ -1,1 +1,1 @@
-/1.3:1-11879
+/1.3:1-11886

Modified: branches/bieri_gui/generic_fns/structure/internal.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/generic_fns/structure/internal.py?rev=11887&r1=11886&r2=11887&view=diff
==============================================================================
--- branches/bieri_gui/generic_fns/structure/internal.py (original)
+++ branches/bieri_gui/generic_fns/structure/internal.py Fri Dec 17 20:16:29 
2010
@@ -1149,10 +1149,10 @@
         element = strip(element, digits)
 
         # Amino acid atom translation table (note, numbers have been 
stripped already!).
-        table = {'C': ['CA', 'CB', 'CG', 'CD', 'CE', 'CZ'],
+        table = {'C': ['CA', 'CB', 'CG', 'CD', 'CE', 'CH2', 'CZ'],
                  'N': ['ND', 'NE', 'NH', 'NZ'],
                  'H': ['HA', 'HB', 'HG', 'HD', 'HE', 'HH', 'HT', 'HZ'],
-                 'O': ['OG', 'OD', 'OE', 'OH'],
+                 'O': ['OG', 'OD', 'OE', 'OH', 'OT'],
                  'S': ['SD', 'SG']
         }