Author: bugman
Date: Fri Feb 18 11:24:24 2011
New Revision: 12548
URL: http://svn.gna.org/viewcvs/relax?rev=12548&view=rev
Log:
Merged revisions 12423-12429,12431-12448,12450,12453,12460,12517-12520 via
svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/1.3
........
r12423 | bugman | 2011-01-21 18:53:04 +0100 (Fri, 21 Jan 2011) | 3 lines
*.old files are now removed by the HTML user manual cleaning script.
........
r12424 | bugman | 2011-01-21 18:54:25 +0100 (Fri, 21 Jan 2011) | 6 lines
The relax website http://nmr-relax.com is now referenced in the HTML
version of the user manual.
A new button in the navigation bar has been added for this. See
http://www.nmr-relax.com/manual/1.3/relax.html (once the new 1.3.9 version
of relax is released).
........
r12425 | bugman | 2011-01-21 18:55:09 +0100 (Fri, 21 Jan 2011) | 6 lines
Big improvements to the HTML user manual generation.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html once
relax version 1.3.9 is
released.
........
r12426 | bugman | 2011-01-22 17:59:44 +0100 (Sat, 22 Jan 2011) | 3 lines
The HTML user manual cleaning script now removes all *.css files.
........
r12427 | bugman | 2011-01-22 21:12:14 +0100 (Sat, 22 Jan 2011) | 3 lines
Created an init file for latex2html so that the figures not in this
directory are included.
........
r12428 | bugman | 2011-01-22 21:47:08 +0100 (Sat, 22 Jan 2011) | 3 lines
Added custom icons for the HTML user manual navigation bar.
........
r12429 | bugman | 2011-01-22 21:47:48 +0100 (Sat, 22 Jan 2011) | 3 lines
Added the relax title and custom icon path to the latex2html config file.
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r12431 | bugman | 2011-01-22 21:55:44 +0100 (Sat, 22 Jan 2011) | 3 lines
The grey icons are now properly named.
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r12432 | bugman | 2011-01-22 22:15:37 +0100 (Sat, 22 Jan 2011) | 5 lines
Fixes for the navigation icons sizes in the HTML user manual.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html.
........
r12433 | bugman | 2011-01-22 22:17:10 +0100 (Sat, 22 Jan 2011) | 5 lines
Increased the splitting level by one.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
........
r12434 | bugman | 2011-01-22 22:19:51 +0100 (Sat, 22 Jan 2011) | 7 lines
The PDF version of the user manual is being partly compiled before the HTML
version.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
The aim is to have the aux and bbl files made so latex2html can use them.
........
r12435 | bugman | 2011-01-22 22:20:22 +0100 (Sat, 22 Jan 2011) | 3 lines
Created the dir var for storing the target directory.
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r12436 | bugman | 2011-01-22 22:21:07 +0100 (Sat, 22 Jan 2011) | 5 lines
Removed the -no-math option to hopefully decrease the number of images in
the HTML user manual.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
........
r12437 | bugman | 2011-01-22 22:40:31 +0100 (Sat, 22 Jan 2011) | 5 lines
Improved the quality of the maths equation images in the HTML user manual.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
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r12438 | bugman | 2011-01-22 22:56:16 +0100 (Sat, 22 Jan 2011) | 5 lines
Added footnote and crossref icons to the HTML user manual.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
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r12439 | bugman | 2011-01-22 23:11:18 +0100 (Sat, 22 Jan 2011) | 5 lines
Set the font size to 12pt in the HTML user manual.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
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r12440 | bugman | 2011-01-22 23:12:08 +0100 (Sat, 22 Jan 2011) | 5 lines
The sections numbers from the PDF manual are now shown.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
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r12441 | bugman | 2011-01-24 16:34:34 +0100 (Mon, 24 Jan 2011) | 7 lines
Removed http://nmr-relax.com from the bottom of all the HTML user manual
pages.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
http://nmr-relax.com is redundant due to all the http://nmr-relax.com links
in the navigation bar.
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r12442 | bugman | 2011-01-24 16:37:45 +0100 (Mon, 24 Jan 2011) | 5 lines
Shifted the -local_icons commmand line arg into the latex2html init file.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
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r12443 | bugman | 2011-01-24 16:39:12 +0100 (Mon, 24 Jan 2011) | 5 lines
Shifted the -html_version commmand line arg into the latex2html init file.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
........
r12444 | bugman | 2011-01-24 16:41:33 +0100 (Mon, 24 Jan 2011) | 5 lines
hifted the -split commmand line arg into the latex2html init file.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
........
r12445 | bugman | 2011-01-24 16:42:55 +0100 (Mon, 24 Jan 2011) | 5 lines
Shifted the -auto_navigation commmand line arg into the latex2html init
file.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
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r12446 | bugman | 2011-01-24 16:44:41 +0100 (Mon, 24 Jan 2011) | 5 lines
Shifted the -external_file commmand line arg into the latex2html init file.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
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r12447 | bugman | 2011-01-24 16:46:00 +0100 (Mon, 24 Jan 2011) | 5 lines
Shifted the -antialias commmand line arg into the latex2html init file.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
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r12448 | bugman | 2011-01-24 16:46:50 +0100 (Mon, 24 Jan 2011) | 5 lines
The antialiasing is now actually in the latex2html init file.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
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r12450 | bugman | 2011-01-25 09:30:32 +0100 (Tue, 25 Jan 2011) | 7 lines
Forced titles into the navigation bar images in the HTML user manual by
tricking latex2html.
This will be visible at http://www.nmr-relax.com/manual/1.3/relax.html with
a new relax release.
The titles were added to the image size strings.
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r12453 | bugman | 2011-01-26 21:01:43 +0100 (Wed, 26 Jan 2011) | 14 lines
Merged the changes to the CHANGES file from the 1.3.9 tag.
The command used was:
svn merge -r12451:12452 svn+ssh://bugman@xxxxxxxxxxx/svn/relax/tags/1.3.9
.....
r12452 | bugman | 2011-01-26 20:59:51 +0100 (Wed, 26 Jan 2011) | 3 lines
Changed paths:
M /tags/1.3.9/docs/CHANGES
Updated the CHANGES file for relax version 1.3.9 (see
http://www.nmr-relax.com/download.html).
.....
........
r12460 | bugman | 2011-01-28 18:47:24 +0100 (Fri, 28 Jan 2011) | 7 lines
Fixes for 2 model-free system tests for a new system which again shows
optimisation differences :S
The results are from Tiago Pais <tpais att itqb dott unl dott pt>
(Message-id:
<BA08C06336CE4466990EBAFB59D7DFCF@Mercurio>,
https://mail.gna.org/public/relax-users/2011-01/msg00029.html.
........
r12517 | bugman | 2011-02-07 19:00:09 +0100 (Mon, 07 Feb 2011) | 5 lines
Fix for the N-state model error returning method for when errors are not
present.
The spin_id variable was not defined.
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r12518 | bugman | 2011-02-07 19:07:19 +0100 (Mon, 07 Feb 2011) | 3 lines
Fix for the calls to RelaxError in the N-state model return_error() method.
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r12519 | bugman | 2011-02-09 13:20:35 +0100 (Wed, 09 Feb 2011) | 3 lines
Added checks showing that Monte Carlo simulations in the N-state model
modify the Q factors.
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r12520 | bugman | 2011-02-09 13:23:19 +0100 (Wed, 09 Feb 2011) | 7 lines
The optimisation of Monte Carlo simulations no longer changes the Q factors
and back calculated data.
There was a bug in which the back calculated RDCs and PCSs, as well as the
Q factors were being
calculated for each Monte Carlo simulation but stored in the non-MC sim
data structures. Therefore
after MC sims, the Q factor and back calculated data would be that of the
last simulation!!!
........
Added:
branches/cst/docs/html/icons/
- copied from r12520, 1.3/docs/html/icons/
branches/cst/docs/latex/.latex2html-init
- copied unchanged from r12520, 1.3/docs/latex/.latex2html-init
Modified:
branches/cst/ (props changed)
branches/cst/docs/CHANGES
branches/cst/docs/html/clean
branches/cst/docs/latex/relax.tex
branches/cst/scons/manuals.py
branches/cst/specific_fns/n_state_model.py
branches/cst/test_suite/system_tests/model_free.py
branches/cst/test_suite/system_tests/n_state_model.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/cst/docs/CHANGES
URL:
http://svn.gna.org/viewcvs/relax/branches/cst/docs/CHANGES?rev=12548&r1=12547&r2=12548&view=diff
Modified: branches/cst/docs/html/clean
URL:
http://svn.gna.org/viewcvs/relax/branches/cst/docs/html/clean?rev=12548&r1=12547&r2=12548&view=diff
Modified: branches/cst/docs/latex/relax.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/cst/docs/latex/relax.tex?rev=12548&r1=12547&r2=12548&view=diff
Modified: branches/cst/scons/manuals.py
URL:
http://svn.gna.org/viewcvs/relax/branches/cst/scons/manuals.py?rev=12548&r1=12547&r2=12548&view=diff
Modified: branches/cst/specific_fns/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/cst/specific_fns/n_state_model.py?rev=12548&r1=12547&r2=12548&view=diff
Modified: branches/cst/test_suite/system_tests/model_free.py
URL:
http://svn.gna.org/viewcvs/relax/branches/cst/test_suite/system_tests/model_free.py?rev=12548&r1=12547&r2=12548&view=diff
Modified: branches/cst/test_suite/system_tests/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/cst/test_suite/system_tests/n_state_model.py?rev=12548&r1=12547&r2=12548&view=diff
r12548 - in /branches/cst: ./ docs/ docs/html/ docs/html/icons/ docs/latex/ scons/ specific_fns/ test_suite/system_tests/