r13375 - /branches/gui_testing/gui/user_functions/structure.py -- July 01, 2011 - 16:48

Author: bugman
Date: Fri Jul  1 16:48:33 2011
New Revision: 13375

URL: http://svn.gna.org/viewcvs/relax?rev=13375&view=rev
Log:
The structure.read_pdb user function window now uses the 'prompt' 
documentation.


Modified:
    branches/gui_testing/gui/user_functions/structure.py

Modified: branches/gui_testing/gui/user_functions/structure.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/gui_testing/gui/user_functions/structure.py?rev=13375&r1=13374&r2=13375&view=diff
==============================================================================
--- branches/gui_testing/gui/user_functions/structure.py (original)
+++ branches/gui_testing/gui/user_functions/structure.py Fri Jul  1 16:48:33 
2011
@@ -119,18 +119,7 @@
 
     # Some class variables.
     image_path = WIZARD_IMAGE_PATH + sep + 'structure' + sep + 'read_pdb.png'
-    main_text = """The reading of PDB files into relax is quite a flexible 
procedure allowing for both models, defined as an ensemble of the same 
molecule but with different atomic positions, and different molecules within 
the same model.  One of more molecules can exist in one or more models.  The 
flexibility allows PDB models to be converted into different molecules and 
different PDB files loaded as the same molecule but as different models.  
This flexibility is controlled by the four keyword arguments 'read_mol', 
'set_mol_name', 'read_model', and 'set_model_num'.
-
-        A few different PDB parsers can be used to read the structural data. 
 The choice of which to use depends on whether your PDB file is supported by 
that reader.  These are selected by setting the 'parser' argument to one of:
-
-            'scientific' - the Scientific Python PDB parser.
-            'internal' - a lower quality and less reliable, although faster, 
PDB parser built into relax.
-
-        In a PDB file, the models are specified by the MODEL PDB record.  
All the supported PDB readers in relax recognise this.  The molecule level is 
quite different between the Scientific Python and internal readers.  For how 
Scientific Python defines molecules, please see its documentation.  The 
internal reader is far simpler as it defines molecules using the TER PDB 
record.  In both cases, the molecules will be numbered consecutively from 1.
-
-        The 'set_mol_name' argument is used to name the molecules within the 
PDB (within one model).  If not set, then the molecules will be named after 
the file name, with the molecule number appended if more than one exists.
-
-        Note that relax will complain if it cannot work out what to do."""
+    uf_path = ['structure', 'read_pdb']
     title = 'PDB loading'