r14512 - /1.3/specific_fns/model_free/pymol.py -- August 29, 2011 - 15:15

Author: bugman
Date: Mon Aug 29 15:15:17 2011
New Revision: 14512

URL: http://svn.gna.org/viewcvs/relax?rev=14512&view=rev
Log:
The backbone oxygen is no longer shown in the PyMOL model-free macros.


Modified:
    1.3/specific_fns/model_free/pymol.py

Modified: 1.3/specific_fns/model_free/pymol.py
URL: 
http://svn.gna.org/viewcvs/relax/1.3/specific_fns/model_free/pymol.py?rev=14512&r1=14511&r2=14512&view=diff
==============================================================================
--- 1.3/specific_fns/model_free/pymol.py (original)
+++ 1.3/specific_fns/model_free/pymol.py Mon Aug 29 15:15:17 2011
@@ -41,7 +41,7 @@
         self.commands.append("set_color %s, [%s, %s, %s]" % (colour_name, 
rgb_array[0], rgb_array[1], rgb_array[2]))
 
         # The peptide bond.
-        self.commands.append("select pept_bond, (name ca,n and resi %i) or 
(name ca,c,o and resi %i)" % (res_num, res_num-1))
+        self.commands.append("select pept_bond, (name ca,n and resi %i) or 
(name ca,c and resi %i)" % (res_num, res_num-1))
         self.commands.append("as sticks, pept_bond")
         self.commands.append("set_bond stick_radius, %s, pept_bond" % width)
         self.commands.append("color %s, pept_bond" % colour_name)
@@ -57,7 +57,7 @@
         self.commands.append("hide")
 
         # Show the backbone bonds as lines.
-        self.commands.append("select bb, (name ca,n,c,o)")
+        self.commands.append("select bb, (name ca,n,c)")
         self.commands.append("show lines, bb")
 
         # Colour the backbone black.