Author: bugman
Date: Wed Jan 11 10:56:34 2012
New Revision: 15152
URL: http://svn.gna.org/viewcvs/relax?rev=15152&view=rev
Log:
Updates to all of the README files for the frame order test models.
Added:
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor/README
- copied, changed from r15143,
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor2/README
Modified:
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor2/README
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone/README
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor/README
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor2/README
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor/README
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor2/README
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor_2_state/README
Copied:
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor/README
(from r15143,
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor2/README)
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor/README?p2=branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor/README&p1=branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor2/README&r1=15143&r2=15152&rev=15152&view=diff
==============================================================================
---
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor2/README
(original)
+++
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor/README
Wed Jan 11 10:56:34 2012
@@ -2,26 +2,24 @@
1. Modify the 'generate_distribution.py' to create the desired
distribution. Then generate the distribution of structures by typing:
-$ relax -t generate_distribution.log generate_distribution.py
+$ rm -f generate_distribution.log; ../../../../relax -t
generate_distribution.log generate_distribution.py; bzip2 -f
generate_distribution.log
2. Generate the RDC and PCS data via the 'back_calc.py'. This needs no
modification. Just type:
-$ relax back_calc.py
+$ ../../../../relax back_calc.py
3. Calculate the reduced C-domain tensors from the new RDC data with the
'tensor_fit.py' script. This also requires no modifications. Just type:
-$ relax -t tensor_fit.log tensor_fit.py
-$ bzip2 -f tensor_fit.log
+$ rm -f tensor_fit.log; ../../../../relax -t tensor_fit.log tensor_fit.py;
bzip2 -f tensor_fit.log
4. Perform the frame order analysis. Select the appropriate model in the
'frame_order.py' script.
-$ relax -t frame_order.log frame_order.py
-$ bzip2 -f frame_order.log
+$ rm -f frame_order.log; ../../../../relax -t frame_order.log
frame_order.py; bzip2 -f frame_order.log
5. For PyMOL visualisation, type:
-$ relax animate.py
+$ ../../../../relax animate.py
Modified:
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor2/README
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor2/README?rev=15152&r1=15151&r2=15152&view=diff
==============================================================================
---
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor2/README
(original)
+++
branches/frame_order_testing/test_suite/shared_data/frame_order/free_rotor2/README
Wed Jan 11 10:56:34 2012
@@ -2,26 +2,24 @@
1. Modify the 'generate_distribution.py' to create the desired
distribution. Then generate the distribution of structures by typing:
-$ relax -t generate_distribution.log generate_distribution.py
+$ rm -f generate_distribution.log; ../../../../relax -t
generate_distribution.log generate_distribution.py; bzip2 -f
generate_distribution.log
2. Generate the RDC and PCS data via the 'back_calc.py'. This needs no
modification. Just type:
-$ relax back_calc.py
+$ ../../../../relax back_calc.py
3. Calculate the reduced C-domain tensors from the new RDC data with the
'tensor_fit.py' script. This also requires no modifications. Just type:
-$ relax -t tensor_fit.log tensor_fit.py
-$ bzip2 -f tensor_fit.log
+$ rm -f tensor_fit.log; ../../../../relax -t tensor_fit.log tensor_fit.py;
bzip2 -f tensor_fit.log
4. Perform the frame order analysis. Select the appropriate model in the
'frame_order.py' script.
-$ relax -t frame_order.log frame_order.py
-$ bzip2 -f frame_order.log
+$ rm -f frame_order.log; ../../../../relax -t frame_order.log
frame_order.py; bzip2 -f frame_order.log
5. For PyMOL visualisation, type:
-$ relax animate.py
+$ ../../../../relax animate.py
Modified:
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone/README
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone/README?rev=15152&r1=15151&r2=15152&view=diff
==============================================================================
---
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone/README
(original)
+++
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone/README
Wed Jan 11 10:56:34 2012
@@ -2,27 +2,24 @@
1. Modify the 'generate_distribution.py' to create the desired
distribution. Then generate the distribution of structures by typing:
-$ relax -t generate_distribution.log generate_distribution.py
-$ bzip2 -f generate_distribution.log
+$ rm -f generate_distribution.log; ../../../../relax -t
generate_distribution.log generate_distribution.py; bzip2 -f
generate_distribution.log
2. Generate the RDC and PCS data via the 'back_calc.py'. This needs no
modification. Just type:
-$ relax back_calc.py
+$ ../../../../relax back_calc.py
3. Calculate the reduced C-domain tensors from the new RDC data with the
'tensor_fit.py' script. This also requires no modifications. Just type:
-$ relax -t tensor_fit.log tensor_fit.py
-$ bzip2 -f tensor_fit.log
+$ rm -f tensor_fit.log; ../../../../relax -t tensor_fit.log tensor_fit.py;
bzip2 -f tensor_fit.log
4. Perform the frame order analysis. Select the appropriate model in the
'frame_order.py' script.
-$ relax -t frame_order.log frame_order.py
-$ bzip2 -f frame_order.log
+$ rm -f frame_order.log; ../../../../relax -t frame_order.log
frame_order.py; bzip2 -f frame_order.log
5. For PyMOL visualisation, type:
-$ relax animate.py
+$ ../../../../relax animate.py
Modified:
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor/README
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor/README?rev=15152&r1=15151&r2=15152&view=diff
==============================================================================
---
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor/README
(original)
+++
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor/README
Wed Jan 11 10:56:34 2012
@@ -2,27 +2,24 @@
1. Modify the 'generate_distribution.py' to create the desired
distribution. Then generate the distribution of structures by typing:
-$ relax -t generate_distribution.log generate_distribution.py
-$ bzip2 -f generate_distribution.log
+$ rm -f generate_distribution.log; ../../../../relax -t
generate_distribution.log generate_distribution.py; bzip2 -f
generate_distribution.log
2. Generate the RDC and PCS data via the 'back_calc.py'. This needs no
modification. Just type:
-$ relax back_calc.py
+$ ../../../../relax back_calc.py
3. Calculate the reduced C-domain tensors from the new RDC data with the
'tensor_fit.py' script. This also requires no modifications. Just type:
-$ relax -t tensor_fit.log tensor_fit.py
-$ bzip2 -f tensor_fit.log
+$ rm -f tensor_fit.log; ../../../../relax -t tensor_fit.log tensor_fit.py;
bzip2 -f tensor_fit.log
4. Perform the frame order analysis. Select the appropriate model in the
'frame_order.py' script.
-$ relax -t frame_order.log frame_order.py
-$ bzip2 -f frame_order.log
+$ rm -f frame_order.log; ../../../../relax -t frame_order.log
frame_order.py; bzip2 -f frame_order.log
5. For PyMOL visualisation, type:
-$ relax animate.py
+$ ../../../../relax animate.py
Modified:
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor2/README
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor2/README?rev=15152&r1=15151&r2=15152&view=diff
==============================================================================
---
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor2/README
(original)
+++
branches/frame_order_testing/test_suite/shared_data/frame_order/iso_cone_free_rotor2/README
Wed Jan 11 10:56:34 2012
@@ -2,27 +2,24 @@
1. Modify the 'generate_distribution.py' to create the desired
distribution. Then generate the distribution of structures by typing:
-$ relax -t generate_distribution.log generate_distribution.py
-$ bzip2 -f generate_distribution.log
+$ rm -f generate_distribution.log; ../../../../relax -t
generate_distribution.log generate_distribution.py; bzip2 -f
generate_distribution.log
2. Generate the RDC and PCS data via the 'back_calc.py'. This needs no
modification. Just type:
-$ relax back_calc.py
+$ ../../../../relax back_calc.py
3. Calculate the reduced C-domain tensors from the new RDC data with the
'tensor_fit.py' script. This also requires no modifications. Just type:
-$ relax -t tensor_fit.log tensor_fit.py
-$ bzip2 -f tensor_fit.log
+$ rm -f tensor_fit.log; ../../../../relax -t tensor_fit.log tensor_fit.py;
bzip2 -f tensor_fit.log
4. Perform the frame order analysis. Select the appropriate model in the
'frame_order.py' script.
-$ relax -t frame_order.log frame_order.py
-$ bzip2 -f frame_order.log
+$ rm -f frame_order.log; ../../../../relax -t frame_order.log
frame_order.py; bzip2 -f frame_order.log
5. For PyMOL visualisation, type:
-$ relax animate.py
+$ ../../../../relax animate.py
Modified:
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor/README
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/rotor/README?rev=15152&r1=15151&r2=15152&view=diff
==============================================================================
---
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor/README
(original)
+++
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor/README
Wed Jan 11 10:56:34 2012
@@ -2,26 +2,24 @@
1. Modify the 'generate_distribution.py' to create the desired
distribution. Then generate the distribution of structures by typing:
-$ relax -t generate_distribution.log generate_distribution.py
+$ rm -f generate_distribution.log; ../../../../relax -t
generate_distribution.log generate_distribution.py; bzip2 -f
generate_distribution.log
2. Generate the RDC and PCS data via the 'back_calc.py'. This needs no
modification. Just type:
-$ relax back_calc.py
+$ ../../../../relax back_calc.py
3. Calculate the reduced C-domain tensors from the new RDC data with the
'tensor_fit.py' script. This also requires no modifications. Just type:
-$ relax -t tensor_fit.log tensor_fit.py
-$ bzip2 -f tensor_fit.log
+$ rm -f tensor_fit.log; ../../../../relax -t tensor_fit.log tensor_fit.py;
bzip2 -f tensor_fit.log
4. Perform the frame order analysis. Select the appropriate model in the
'frame_order.py' script.
-$ relax -t frame_order.log frame_order.py
-$ bzip2 -f frame_order.log
+$ rm -f frame_order.log; ../../../../relax -t frame_order.log
frame_order.py; bzip2 -f frame_order.log
5. For PyMOL visualisation, type:
-$ relax animate.py
+$ ../../../../relax animate.py
Modified:
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor2/README
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/rotor2/README?rev=15152&r1=15151&r2=15152&view=diff
==============================================================================
---
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor2/README
(original)
+++
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor2/README
Wed Jan 11 10:56:34 2012
@@ -2,26 +2,24 @@
1. Modify the 'generate_distribution.py' to create the desired
distribution. Then generate the distribution of structures by typing:
-$ relax -t generate_distribution.log generate_distribution.py
+$ rm -f generate_distribution.log; ../../../../relax -t
generate_distribution.log generate_distribution.py; bzip2 -f
generate_distribution.log
2. Generate the RDC and PCS data via the 'back_calc.py'. This needs no
modification. Just type:
-$ relax back_calc.py
+$ ../../../../relax back_calc.py
3. Calculate the reduced C-domain tensors from the new RDC data with the
'tensor_fit.py' script. This also requires no modifications. Just type:
-$ relax -t tensor_fit.log tensor_fit.py
-$ bzip2 -f tensor_fit.log
+$ rm -f tensor_fit.log; ../../../../relax -t tensor_fit.log tensor_fit.py;
bzip2 -f tensor_fit.log
4. Perform the frame order analysis. Select the appropriate model in the
'frame_order.py' script.
-$ relax -t frame_order.log frame_order.py
-$ bzip2 -f frame_order.log
+$ rm -f frame_order.log; ../../../../relax -t frame_order.log
frame_order.py; bzip2 -f frame_order.log
5. For PyMOL visualisation, type:
-$ relax animate.py
+$ ../../../../relax animate.py
Modified:
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor_2_state/README
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/rotor_2_state/README?rev=15152&r1=15151&r2=15152&view=diff
==============================================================================
---
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor_2_state/README
(original)
+++
branches/frame_order_testing/test_suite/shared_data/frame_order/rotor_2_state/README
Wed Jan 11 10:56:34 2012
@@ -2,26 +2,24 @@
1. Modify the 'generate_distribution.py' to create the desired
distribution. Then generate the distribution of structures by typing:
-$ relax -t generate_distribution.log generate_distribution.py
+$ rm -f generate_distribution.log; ../../../../relax -t
generate_distribution.log generate_distribution.py; bzip2 -f
generate_distribution.log
2. Generate the RDC and PCS data via the 'back_calc.py'. This needs no
modification. Just type:
-$ relax back_calc.py
+$ ../../../../relax back_calc.py
3. Calculate the reduced C-domain tensors from the new RDC data with the
'tensor_fit.py' script. This also requires no modifications. Just type:
-$ relax -t tensor_fit.log tensor_fit.py
-$ bzip2 -f tensor_fit.log
+$ rm -f tensor_fit.log; ../../../../relax -t tensor_fit.log tensor_fit.py;
bzip2 -f tensor_fit.log
4. Perform the frame order analysis. Select the appropriate model in the
'frame_order.py' script.
-$ relax -t frame_order.log frame_order.py
-$ bzip2 -f frame_order.log
+$ rm -f frame_order.log; ../../../../relax -t frame_order.log
frame_order.py; bzip2 -f frame_order.log
5. For PyMOL visualisation, type:
-$ relax animate.py
+$ ../../../../relax animate.py
r15152 - in /branches/frame_order_testing/test_suite/shared_data/frame_order: free_rotor/ free_rotor2/ iso_cone/ iso_cone_fr...