Author: bugman
Date: Fri Mar 16 17:08:09 2012
New Revision: 15522
URL: http://svn.gna.org/viewcvs/relax?rev=15522&view=rev
Log:
Updated the GUI description on the http://www.nmr-relax.com/features.html
page.
This includes a lot of formatting fixes. The Bieri et al., 2011 reference
has also been added to
http://www.nmr-relax.com/refs.html.
Modified:
website/features.html
website/refs.html
website/relax.css
Modified: website/features.html
URL:
http://svn.gna.org/viewcvs/relax/website/features.html?rev=15522&r1=15521&r2=15522&view=diff
==============================================================================
--- website/features.html (original)
+++ website/features.html Fri Mar 16 17:08:09 2012
@@ -108,15 +108,31 @@
<ul>
<li>The prompt - this is the primary interface of relax. Rather than
reinventing a new command language, relax's interface is the powerful Python
prompt. This gives the power user full access to a proven programming
language.</li>
<li>Scripting - this provides a more powerful and flexible framework
for controlling the program. The script will be executed as Python code
enabling advanced programming for automating data analysis. All the features
available within the prompt environment are accessible to the script.</li>
- <li>Graphical User Interface (GUI) - this offers a simple and easy way
of performing data analysis. Calculation of steady-state NOE, curve fitting
of R<sub>1</sub> and R<sub>2</sub> NMR relaxation rates as well as model-free
analysis are supported. Most parameters used for analysis can be set
manually, but system standards are set accoring to d'Auvergne and Gooley,
2008b. In addition, the graphical user interface has a fully automated
model-free analysis feature that performs analysis without any user
intervention after loading NOE, R<sub>1</sub> and R<sub>2</sub> data.</li>
+ <li>Graphical User Interface (GUI) - this offers a simple and easy way
of performing data analysis. Calculation of steady-state NOE, curve fitting
of R<sub>1</sub> and R<sub>2</sub> NMR relaxation rates as well as model-free
analysis are supported. Most parameters used for analysis can be set
manually, but system standards are set accoring to <a
href="refs.html#dAuvergneGooley08b">d'Auvergne and Gooley, 2008b</a>. In
addition, the graphical user interface has a fully automated model-free
analysis feature that performs analysis without any user intervention after
loading NOE, R<sub>1</sub> and R<sub>2</sub> data.</li>
</ul>
- <p>To start relax with the graphical interface, start relax using: $
relax -g</p>
- <p>relaxGUI: a new software for fast and simple NMR relaxation data
analysis and calculation of ps-ns and μs motion of proteins., Bieri M,
d'Auvergne EJ, Gooley PR., J Biomol NMR, 2011</p>
- <p>Screenshots running on Ubuntu 11.04:</p>
- <img src="images/gui/gui_modelfree.png" alt="Model-free tab of the relax
GUI."/> Model-free analysis interface
- <img src="images/gui/gui_Rx.png" alt="Relaxation curve-fitting tab of
the relax GUI."/> Relaxation rate curve-fitting interface
- <img src="images/gui/gui_NOE.png" alt="Steady-state NOE tab of the relax
GUI."/> Steady-state NOE calculation interface
+ <p>The primary references for relax and the UIs are <a
href="refs.html#dAuvergneGooley08a">d'Auvergne and Gooley, 2008a</a> and <a
href="refs.html#dAuvergneGooley08b">d'Auvergne and Gooley, 2008b</a>, whereas
the primary reference for the GUI is <a href="refs.html#Bieri11">Bieri et
al., 2011</a>.</p>
+
+ <h3>relax GUI</h3>
+ <p>To start relax with the graphical interface, type:</p>
+ <p><em>$ relax -g</em></p>
+
+ <h4>Screenshots</h4>
+ <p>Some screenshots of the second version of the GUI are:</p>
+
+ <table class="screenshot_table">
+ <tr>
+ <td>
+ <img src="images/gui/gui_modelfree.png" alt="Model-free tab of the
relax GUI."/><br/>Model-free analysis interface.
+ </td>
+ <td>
+ <img src="images/gui/gui_Rx.png" alt="Relaxation curve-fitting tab
of the relax GUI."/><br/>Relaxation rate curve-fitting interface.
+ </td>
+ <td>
+ <img src="images/gui/gui_NOE.png" alt="Steady-state NOE tab of the
relax GUI."/><br/>Steady-state NOE calculation interface.
+ </td>
+ </tr>
+ </table>
</div>
</div>
Modified: website/refs.html
URL:
http://svn.gna.org/viewcvs/relax/website/refs.html?rev=15522&r1=15521&r2=15522&view=diff
==============================================================================
--- website/refs.html (original)
+++ website/refs.html Fri Mar 16 17:08:09 2012
@@ -33,6 +33,11 @@
<li class="ref_li" id="dAuvergneGooley08a">d'Auvergne, E. J. and
Gooley, P. R. (2008). Optimisation of NMR dynamic models I. Minimisation
algorithms and their performance within the model-free and Brownian
rotational diffusion spaces. <em>J. Biomol. NMR</em>, <strong>40</strong>(2),
107-119. (<a
href="http://dx.doi.org/10.1007/s10858-007-9214-2";>abstract</a>)</li>
<li class="ref_li" id="dAuvergneGooley08b">d'Auvergne, E. J. and
Gooley, P. R. (2008). Optimisation of NMR dynamic models II. A new
methodology for the dual optimisation of the model-free parameters and the
Brownian rotational diffusion tensor. <em>J. Biomol. NMR</em>,
<strong>40</strong>(2), 121-133. (<a
href="http://dx.doi.org/10.1007/s10858-007-9213-3";>abstract</a>)</li>
+ </ul>
+
+ <h3>relax GUI</h3>
+ <ul class="ref_ul">
+ <li class="ref_li" id="Bieri">Bieri M., d'Auvergne E. J., Gooley P. R.
(2011). relaxGUI: a new software for fast and simple NMR relaxation data
analysis and calculation of ps-ns and μs motion of proteins. <em>J.
Biomol. NMR</em>, <strong>50</strong>(2), 147-155. (<a
href="http://dx.doi.org/10.1007/s10858-011-9509-1";>abstract</a>)</li>
</ul>
</div>
Modified: website/relax.css
URL:
http://svn.gna.org/viewcvs/relax/website/relax.css?rev=15522&r1=15521&r2=15522&view=diff
==============================================================================
--- website/relax.css (original)
+++ website/relax.css Fri Mar 16 17:08:09 2012
@@ -169,6 +169,15 @@
margin-top:20px;
}
+.screenshot_table {
+ text-align:center;
+ font-size:small;
+ border:0em;
+ width:100%;
+ padding:0em;
+ border-collapse: collapse;
+}
+
a {
text-decoration:none;
color:#0017aa;
r15522 - in /website: features.html refs.html relax.css