Author: bugman
Date: Wed May 2 20:42:08 2012
New Revision: 15881
URL: http://svn.gna.org/viewcvs/relax?rev=15881&view=rev
Log:
Created the Bmrb.test_bmrb_rw GUI test.
This incomplete test is based on the bmrb_rw.py system test script.
Added:
1.3/test_suite/gui_tests/bmrb.py
Modified:
1.3/test_suite/gui_tests/__init__.py
Modified: 1.3/test_suite/gui_tests/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/test_suite/gui_tests/__init__.py?rev=15881&r1=15880&r2=15881&view=diff
==============================================================================
--- 1.3/test_suite/gui_tests/__init__.py (original)
+++ 1.3/test_suite/gui_tests/__init__.py Wed May 2 20:42:08 2012
@@ -29,6 +29,7 @@
from unittest import TestSuite
# relax GUI test module imports.
+from bmrb import Bmrb
from model_free import Mf
from noe import Noe
from rx import Rx
@@ -36,7 +37,8 @@
from test_suite.relax_test_loader import RelaxTestLoader as TestLoader
-__all__ = ['model_free',
+__all__ = ['bmrb',
+ 'model_free',
'noe',
'rx',
'state']
@@ -80,6 +82,7 @@
# All tests.
if not tests:
+ suite_array.append(TestLoader().loadTestsFromTestCase(Bmrb))
suite_array.append(TestLoader().loadTestsFromTestCase(Mf))
suite_array.append(TestLoader().loadTestsFromTestCase(Noe))
suite_array.append(TestLoader().loadTestsFromTestCase(Rx))
Added: 1.3/test_suite/gui_tests/bmrb.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/test_suite/gui_tests/bmrb.py?rev=15881&view=auto
==============================================================================
--- 1.3/test_suite/gui_tests/bmrb.py (added)
+++ 1.3/test_suite/gui_tests/bmrb.py Wed May 2 20:42:08 2012
@@ -1,0 +1,154 @@
+###############################################################################
+#
#
+# Copyright (C) 2012 Edward d'Auvergne
#
+#
#
+# This file is part of the program relax.
#
+#
#
+# relax is free software; you can redistribute it and/or modify
#
+# it under the terms of the GNU General Public License as published by
#
+# the Free Software Foundation; either version 2 of the License, or
#
+# (at your option) any later version.
#
+#
#
+# relax is distributed in the hope that it will be useful,
#
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
#
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
#
+# GNU General Public License for more details.
#
+#
#
+# You should have received a copy of the GNU General Public License
#
+# along with relax; if not, write to the Free Software
#
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
+#
#
+###############################################################################
+
+# Module docstring.
+"""GUI tests for the BMRB related activities."""
+
+# Python module imports.
+from os import sep
+
+# relax module imports.
+from generic_fns.pipes import VALID_TYPES
+from status import Status; status = Status()
+from test_suite.gui_tests.base_classes import GuiTestCase
+
+# relax GUI imports.
+from gui.misc import str_to_gui
+from gui import user_functions
+from gui.wizard import Wiz_window
+
+
+class Bmrb(GuiTestCase):
+ """Class for testing the BMRB related functions in the GUI."""
+
+
+ def test_bmrb_rw(self):
+ """Test the reading and writing of BMRB files.
+
+ This test should match that of the system test script bmrb_rw.py.
+ """
+
+ # Create a wizard instance to be used in all user function pages.
+ wizard = Wiz_window(self.app.gui)
+
+ # Create the data pipe.
+ pipe_create = user_functions.pipe.Create_page(wizard)
+ pipe_create.pipe_name.SetValue(str_to_gui('results'))
+ pipe_create.pipe_type.SetSelection(VALID_TYPES.index('mf'))
+ pipe_create.on_execute()
+
+ # Read the results.
+ results_read = user_functions.results.Read_page(wizard)
+ results_read.file.SetValue(str_to_gui(status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP'+sep+'final_results_trunc_1.3'))
+ results_read.on_execute()
+
+ # Play with the data.
+ deselect_all = user_functions.deselect.All_page(wizard)
+ deselect_all.on_execute()
+
+ spin_copy = user_functions.spin.Copy_page(wizard)
+ spin_copy.res_from.SetValue(str_to_gui('9 None'))
+ spin_copy.res_num_to.SetValue(str_to_gui('9'))
+ spin_copy.spin_name_to.SetValue(str_to_gui('NE'))
+ spin_copy.on_execute()
+
+ select_spin = user_functions.select.Spin_page(wizard)
+ select_spin.spin_id.SetValue(str_to_gui(':9'))
+ select_spin.on_execute()
+ select_spin.spin_id.SetValue(str_to_gui(':10'))
+ select_spin.on_execute()
+ select_spin.spin_id.SetValue(str_to_gui(':11'))
+ select_spin.on_execute()
+
+ spin_name = user_functions.spin.Name_page(wizard)
+ spin_name.name.SetValue(str_to_gui('N'))
+ spin_name.on_execute()
+
+ spin_element = user_functions.spin.Element_page(wizard)
+ spin_element.spin_id.SetValue(str_to_gui('N'))
+ spin_element.on_execute()
+
+ #molecule_name = user_functions.molecule.Name_page(wizard)
+ #molecule_name.name.SetValue(str_to_gui('OMP'))
+ #molecule_name.type.SetValue(str_to_gui('protein'))
+ #molecule_name.on_execute()
+
+ #bmrb_thiol_state = user_functions.bmrb.Thiol_state_page(wizard)
+ #bmrb_thiol_state.state.SetValue(str_to_gui('reduced'))
+ #bmrb_thiol_state.on_execute()
+
+ # Display the data (as a test).
+ #relax_data_display = user_functions.relax_data.Display_page(wizard)
+ #relax_data_display.ri_id.SetValue(str_to_gui('R1_800'))
+ #relax_data_display.on_execute()
+
+ # Temperature control and peak intensity type.
+ ri_ids = ['R1_600', 'R2_600', 'NOE_600', 'R1_800', 'R2_800',
'NOE_800']
+ for i in range(6):
+ pass
+ #relax_data_temp_calibration =
user_functions.relax_data.Temp_calibration_page(wizard)
+
#relax_data_temp_calibration.ri_id.SetValue(str_to_gui(ri_ids[i]))
+
#relax_data_temp_calibration.method.SetValue(str_to_gui('methanol'))
+ #relax_data_temp_calibration.on_execute()
+
+ #relax_data_temp_control =
user_functions.relax_data.Temp_control_page(wizard)
+ #relax_data_temp_control.ri_id.SetValue(str_to_gui(ri_ids[i]))
+ #relax_data_temp_control.method.SetValue(str_to_gui('single fid
interleaving'))
+ #relax_data_temp_control.on_execute()
+
+ #relax_data_peak_intensity_type =
user_functions.relax_data.Peak_intensity_type_page(wizard)
+
#relax_data_peak_intensity_type.ri_id.SetValue(str_to_gui(ri_ids[i]))
+
#relax_data_peak_intensity_type.type.SetValue(str_to_gui('height'))
+ #relax_data_peak_intensity_type.on_execute()
+
+ # Set up some BMRB information.
+ #bmrb_software_select =
user_functions.bmrb.Software_select_page(wizard)
+ #bmrb_software_select.name.SetValue(str_to_gui('NMRPipe'))
+ #bmrb_software_select.on_execute()
+ #bmrb_software_select.name.SetValue(str_to_gui('Sparky'))
+ #bmrb_software_select.version.SetValue(str_to_gui('3.106'))
+ #bmrb_software_select.on_execute()
+
+ bmrb_citation = user_functions.bmrb.Citation_page(wizard)
+ bmrb_citation.cite_id.SetValue(str_to_gui('test'))
+ bmrb_citation.SetValue(key='authors', value=[["Edward",
"d'Auvergne", "E.", "J."], ["Paul", "Gooley", "P.", "R."]])
+ bmrb_citation.on_execute()
+
+ #bmrb.citation(cite_id='test', authors=[["Edward", "d'Auvergne",
"E.", "J."], ["Paul", "Gooley", "P.", "R."]], doi="10.1039/b702202f",
pubmed_id="17579774", full_citation="d'Auvergne E. J., Gooley P. R. (2007).
Set theory formulation of the model-free problem and the diffusion seeded
model-free paradigm. Mol. Biosyst., 3(7), 483-494.", title="Set theory
formulation of the model-free problem and the diffusion seeded model-free
paradigm.", status="published", type="journal", journal_abbrev="Mol.
Biosyst.", journal_full="Molecular Biosystems", volume=3, issue=7,
page_first=483, page_last=498, year=2007)
+
+ #bmrb.software(name='X', url='http://www.nmr-relax.com',
vendor_name='me', cite_ids=['test'], tasks=['procrastinating', 'nothing
much', 'wasting time'])
+
+ #bmrb.script(file='noe.py',
dir=status.install_path+sep+'sample_scripts', analysis_type='noe',
engine='relax')
+ #bmrb.script(file='relax_fit.py',
dir=status.install_path+sep+'sample_scripts', analysis_type='relax_fit',
engine='relax')
+ #bmrb.script(file='dauvergne_protocol.py',
dir=status.install_path+sep+'sample_scripts'+sep+'model_free',
analysis_type='mf', model_selection='AIC', engine='relax', model_elim=True,
universal_solution=True)
+
+ # Write, then read the data to a new data pipe.
+ #bmrb.write(file=ds.tmpfile, dir=None, version=ds.version,
force=True)
+ #pipe.create(pipe_name='new', pipe_type='mf')
+ #bmrb.read(file=ds.tmpfile, version=ds.version)
+
+ # Display tests.
+ #sequence.display()
+ #relax_data.display(ri_id='R1_800')
+
+ # Save the program state.
+ #state.save('devnull', force=True)
r15881 - in /1.3/test_suite/gui_tests: __init__.py bmrb.py