Author: bugman Date: Mon May 7 10:12:26 2012 New Revision: 16028 URL: http://svn.gna.org/viewcvs/relax?rev=16028&view=rev Log: The Bmrb.test_bmrb_rw GUI test is now complete and fully uses the new auto-generated user functions. This test will only pass once all the relevant user functions are converted to the auto-generation design! Modified: branches/uf_redesign/test_suite/gui_tests/bmrb.py Modified: branches/uf_redesign/test_suite/gui_tests/bmrb.py URL: http://svn.gna.org/viewcvs/relax/branches/uf_redesign/test_suite/gui_tests/bmrb.py?rev=16028&r1=16027&r2=16028&view=diff ============================================================================== --- branches/uf_redesign/test_suite/gui_tests/bmrb.py (original) +++ branches/uf_redesign/test_suite/gui_tests/bmrb.py Mon May 7 10:12:26 2012 @@ -54,93 +54,48 @@ self.execute_uf(name='pipe.create', pipe_name='results', pipe_type='mf') # Read the results. - results_read = uf_pages.results.Read_page(self._wizard) - results_read.file.SetValue(str_to_gui(status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP'+sep+'final_results_trunc_1.3')) - results_read.on_execute() + self.execute_uf(name='results.read', file='final_results_trunc_1.3', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP') # Play with the data. - deselect_all = uf_pages.deselect.All_page(self._wizard) - deselect_all.on_execute() - - spin_copy = uf_pages.spin.Copy_page(self._wizard) - spin_copy.res_from.SetValue(str_to_gui('9 None')) - spin_copy.res_num_to.SetValue(str_to_gui('9')) - spin_copy.spin_name_to.SetValue(str_to_gui('NE')) - spin_copy.on_execute() - - select_spin = uf_pages.select.Spin_page(self._wizard) - select_spin.spin_id.SetValue(str_to_gui(':9')) - select_spin.on_execute() - select_spin.spin_id.SetValue(str_to_gui(':10')) - select_spin.on_execute() - select_spin.spin_id.SetValue(str_to_gui(':11')) - select_spin.on_execute() - - spin_name = uf_pages.spin.Name_page(self._wizard) - spin_name.name.SetValue(str_to_gui('N')) - spin_name.on_execute() - - spin_element = uf_pages.spin.Element_page(self._wizard) - spin_element.spin_id.SetValue(str_to_gui('N')) - spin_element.on_execute() - - #molecule_name = uf_pages.molecule.Name_page(self._wizard) - #molecule_name.name.SetValue(str_to_gui('OMP')) - #molecule_name.type.SetValue(str_to_gui('protein')) - #molecule_name.on_execute() - - #bmrb_thiol_state = uf_pages.bmrb.Thiol_state_page(self._wizard) - #bmrb_thiol_state.state.SetValue(str_to_gui('reduced')) - #bmrb_thiol_state.on_execute() + self.execute_uf(name='deselect.all') + self.execute_uf(name='spin.copy', spin_from=':9', spin_to=':9@NE') + self.execute_uf(name='select.spin', ':9') + self.execute_uf(name='select.spin', ':10') + self.execute_uf(name='select.spin', ':11') + self.execute_uf(name='spin.name', name='N') + self.execute_uf(name='spin.element', element='N') + self.execute_uf(name='molecule.name', name='OMP') + self.execute_uf(name='molecule.type', type='protein') + self.execute_uf(name='bmrb.thiol_state', state='reduced') # Display the data (as a test). - #relax_data_display = uf_pages.relax_data.Display_page(self._wizard) - #relax_data_display.ri_id.SetValue(str_to_gui('R1_800')) - #relax_data_display.on_execute() + self.execute_uf(name='relax_data.display', ri_id='R1_800') # Temperature control and peak intensity type. ri_ids = ['R1_600', 'R2_600', 'NOE_600', 'R1_800', 'R2_800', 'NOE_800'] for i in range(6): - pass - #relax_data_temp_calibration = uf_pages.relax_data.Temp_calibration_page(self._wizard) - #relax_data_temp_calibration.ri_id.SetValue(str_to_gui(ri_ids[i])) - #relax_data_temp_calibration.method.SetValue(str_to_gui('methanol')) - #relax_data_temp_calibration.on_execute() - - #relax_data_temp_control = uf_pages.relax_data.Temp_control_page(self._wizard) - #relax_data_temp_control.ri_id.SetValue(str_to_gui(ri_ids[i])) - #relax_data_temp_control.method.SetValue(str_to_gui('single fid interleaving')) - #relax_data_temp_control.on_execute() - - #relax_data_peak_intensity_type = uf_pages.relax_data.Peak_intensity_type_page(self._wizard) - #relax_data_peak_intensity_type.ri_id.SetValue(str_to_gui(ri_ids[i])) - #relax_data_peak_intensity_type.type.SetValue(str_to_gui('height')) - #relax_data_peak_intensity_type.on_execute() + self.execute_uf(name='relax_data.temp_calibration', ri_id=ri_ids[i], method='methanol') + self.execute_uf(name='relax_data.temp_control', ri_id=ri_ids[i], method='single fid interleaving') + self.execute_uf(name='relax_data.peak_intensity_type', ri_id=ri_ids[i], type='height') # Set up some BMRB information. - #bmrb_software_select = uf_pages.bmrb.Software_select_page(self._wizard) - #bmrb_software_select.name.SetValue(str_to_gui('NMRPipe')) - #bmrb_software_select.on_execute() - #bmrb_software_select.name.SetValue(str_to_gui('Sparky')) - #bmrb_software_select.version.SetValue(str_to_gui('3.106')) - #bmrb_software_select.on_execute() + self.execute_uf(name='bmrb.software_select', 'NMRPipe') + self.execute_uf(name='bmrb.software_select', 'Sparky', version='3.106') - self.execute_uf(page=uf_pages.bmrb.Citation_page, cite_id='test', authors=[["Edward", "d'Auvergne", "E.", "J."], ["Paul", "Gooley", "P.", "R."]], doi="10.1039/b702202f", pubmed_id="17579774", full_citation="d'Auvergne E. J., Gooley P. R. (2007). Set theory formulation of the model-free problem and the diffusion seeded model-free paradigm. Mol. Biosyst., 3(7), 483-494.", title="Set theory formulation of the model-free problem and the diffusion seeded model-free paradigm.", status="published", type="journal", journal_abbrev="Mol. Biosyst.", journal_full="Molecular Biosystems", volume=3, issue=7, page_first=483, page_last=498, year=2007) - - #bmrb.software(name='X', url='http://www.nmr-relax.com', vendor_name='me', cite_ids=['test'], tasks=['procrastinating', 'nothing much', 'wasting time']) - - #bmrb.script(file='noe.py', dir=status.install_path+sep+'sample_scripts', analysis_type='noe', engine='relax') - #bmrb.script(file='relax_fit.py', dir=status.install_path+sep+'sample_scripts', analysis_type='relax_fit', engine='relax') - #bmrb.script(file='dauvergne_protocol.py', dir=status.install_path+sep+'sample_scripts'+sep+'model_free', analysis_type='mf', model_selection='AIC', engine='relax', model_elim=True, universal_solution=True) + self.execute_uf(name='bmrb.citation', cite_id='test', authors=[["Edward", "d'Auvergne", "E.", "J."], ["Paul", "Gooley", "P.", "R."]], doi="10.1039/b702202f", pubmed_id="17579774", full_citation="d'Auvergne E. J., Gooley P. R. (2007). Set theory formulation of the model-free problem and the diffusion seeded model-free paradigm. Mol. Biosyst., 3(7), 483-494.", title="Set theory formulation of the model-free problem and the diffusion seeded model-free paradigm.", status="published", type="journal", journal_abbrev="Mol. Biosyst.", journal_full="Molecular Biosystems", volume=3, issue=7, page_first=483, page_last=498, year=2007) + self.execute_uf(name='bmrb.software', name='X', url='http://www.nmr-relax.com', vendor_name='me', cite_ids=['test'], tasks=['procrastinating', 'nothing much', 'wasting time']) + self.execute_uf(name='bmrb.script', file='noe.py', dir=status.install_path+sep+'sample_scripts', analysis_type='noe', engine='relax') + self.execute_uf(name='bmrb.script', file='relax_fit.py', dir=status.install_path+sep+'sample_scripts', analysis_type='relax_fit', engine='relax') + self.execute_uf(name='bmrb.script', file='dauvergne_protocol.py', dir=status.install_path+sep+'sample_scripts'+sep+'model_free', analysis_type='mf', model_selection='AIC', engine='relax', model_elim=True, universal_solution=True) # Write, then read the data to a new data pipe. - #bmrb.write(file=ds.tmpfile, dir=None, version=ds.version, force=True) - #pipe.create(pipe_name='new', pipe_type='mf') - #bmrb.read(file=ds.tmpfile, version=ds.version) + self.execute_uf(name='bmrb.write', file=ds.tmpfile, dir=None, version=ds.version, force=True) + self.execute_uf(name='pipe.create', pipe_name='new', pipe_type='mf') + self.execute_uf(name='bmrb.read', file=ds.tmpfile, version=ds.version) # Display tests. - #sequence.display() - #relax_data.display(ri_id='R1_800') + self.execute_uf(name='sequence.display') + self.execute_uf(name='relax_data.display', ri_id='R1_800') # Save the program state. - #state.save('devnull', force=True) + self.execute_uf(name='state.save', 'devnull', force=True)