Author: bugman
Date: Sun May 13 17:15:25 2012
New Revision: 16284
URL: http://svn.gna.org/viewcvs/relax?rev=16284&view=rev
Log:
Improved the keyboard mnemonics for the user function sub-menus.
There are no longer any clashing letters.
Modified:
branches/uf_redesign/user_functions/deselect.py
branches/uf_redesign/user_functions/molmol.py
branches/uf_redesign/user_functions/n_state_model.py
branches/uf_redesign/user_functions/pymol_control.py
branches/uf_redesign/user_functions/select.py
branches/uf_redesign/user_functions/spectrum.py
branches/uf_redesign/user_functions/structure.py
Modified: branches/uf_redesign/user_functions/deselect.py
URL:
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/user_functions/deselect.py?rev=16284&r1=16283&r2=16284&view=diff
==============================================================================
--- branches/uf_redesign/user_functions/deselect.py (original)
+++ branches/uf_redesign/user_functions/deselect.py Sun May 13 17:15:25 2012
@@ -215,7 +215,7 @@
relax> deselect.reverse()
"""
uf.backend = selection.reverse
-uf.menu_text = "&reverse"
+uf.menu_text = "re&verse"
uf.gui_icon = "oxygen.actions.system-switch-user"
uf.wizard_size = (700, 550)
uf.wizard_apply_button = False
Modified: branches/uf_redesign/user_functions/molmol.py
URL:
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/user_functions/molmol.py?rev=16284&r1=16283&r2=16284&view=diff
==============================================================================
--- branches/uf_redesign/user_functions/molmol.py (original)
+++ branches/uf_redesign/user_functions/molmol.py Sun May 13 17:15:25 2012
@@ -329,7 +329,7 @@
relax> molmol.ribbon()
"""
uf.backend = molmol.ribbon
-uf.menu_text = "&ribbon"
+uf.menu_text = "ri&bbon"
uf.wizard_size = (700, 500)
uf.wizard_height_desc = 450
uf.wizard_apply_button = False
Modified: branches/uf_redesign/user_functions/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/user_functions/n_state_model.py?rev=16284&r1=16283&r2=16284&view=diff
==============================================================================
--- branches/uf_redesign/user_functions/n_state_model.py (original)
+++ branches/uf_redesign/user_functions/n_state_model.py Sun May 13 17:15:25
2012
@@ -78,7 +78,7 @@
relax> n_state_model.CoM(pivot_point=[0.0, 0.0, 0.0], centre=[0.0, 0.0, 1.0])
"""
uf.backend = n_state_model_obj._CoM
-uf.menu_text = "&CoM"
+uf.menu_text = "Co&M"
uf.wizard_height_desc = 350
uf.wizard_size = (800, 600)
uf.wizard_apply_button = False
Modified: branches/uf_redesign/user_functions/pymol_control.py
URL:
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/user_functions/pymol_control.py?rev=16284&r1=16283&r2=16284&view=diff
==============================================================================
--- branches/uf_redesign/user_functions/pymol_control.py (original)
+++ branches/uf_redesign/user_functions/pymol_control.py Sun May 13 17:15:25
2012
@@ -60,7 +60,7 @@
relax> pymol.cartoon()
"""
uf.backend = pymol_control.cartoon
-uf.menu_text = "car&toon"
+uf.menu_text = "cart&oon"
uf.wizard_size = (700, 500)
uf.wizard_height_desc = 450
uf.wizard_apply_button = False
Modified: branches/uf_redesign/user_functions/select.py
URL:
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/user_functions/select.py?rev=16284&r1=16283&r2=16284&view=diff
==============================================================================
--- branches/uf_redesign/user_functions/select.py (original)
+++ branches/uf_redesign/user_functions/select.py Sun May 13 17:15:25 2012
@@ -215,7 +215,7 @@
relax> select.reverse()
"""
uf.backend = selection.reverse
-uf.menu_text = "&reverse"
+uf.menu_text = "re&verse"
uf.gui_icon = "oxygen.actions.system-switch-user"
uf.wizard_size = (700, 550)
uf.wizard_apply_button = False
Modified: branches/uf_redesign/user_functions/spectrum.py
URL:
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/user_functions/spectrum.py?rev=16284&r1=16283&r2=16284&view=diff
==============================================================================
--- branches/uf_redesign/user_functions/spectrum.py (original)
+++ branches/uf_redesign/user_functions/spectrum.py Sun May 13 17:15:25 2012
@@ -425,7 +425,7 @@
relax> spectrum.replicated(['ncyc2', 'ncyc2b'])
"""
uf.backend = spectrum.replicated
-uf.menu_text = "&replicated"
+uf.menu_text = "re&plicated"
uf.gui_icon = "oxygen.actions.edit-rename"
uf.wizard_size = (700, 500)
uf.wizard_image = WIZARD_IMAGE_PATH + 'spectrum' + sep + 'spectrum_200.png'
Modified: branches/uf_redesign/user_functions/structure.py
URL:
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/user_functions/structure.py?rev=16284&r1=16283&r2=16284&view=diff
==============================================================================
--- branches/uf_redesign/user_functions/structure.py (original)
+++ branches/uf_redesign/user_functions/structure.py Sun May 13 17:15:25 2012
@@ -141,7 +141,7 @@
This allows atoms to be connected in the internal structural object. The
global index is normally equal to the PDB atom number minus 1.
"""
uf.backend = generic_fns.structure.main.connect_atom
-uf.menu_text = "&connect_atom"
+uf.menu_text = "co&nnect_atom"
uf.wizard_image = WIZARD_IMAGE_PATH + 'structure' + sep + '2JK4.png'
@@ -210,7 +210,7 @@
To create the tensor PDB representation, a number of algorithms are
utilised. Firstly the centre of mass is calculated for the selected residues
and is represented in the PDB by a C atom. Then the axes of the diffusion
are calculated, as unit vectors scaled to the appropriate length (multiplied
by the eigenvalue Dx, Dy, Dz, Dpar, Dper, or Diso as well as the scale
value), and a C atom placed at the position of this vector plus the centre of
mass. Finally a uniform distribution of vectors on a sphere is generated
using spherical coordinates. By incrementing the polar angle using an arccos
distribution, a radial array of vectors representing latitude are created
while incrementing the azimuthal angle evenly creates the longitudinal
vectors. These unit vectors, which are distributed within the PDB frame and
are of 1 Angstrom in length, are first rotated into the diffusion frame using
a rotation matrix (the spherical diffusion tensor is not rotated). Then they
are multiplied by the diffusion tensor matrix to extend the vector out to the
correct length, and finally multiplied by the scale value so that the vectors
reasonably superimpose onto the macromolecular structure. The last set of
algorithms place all this information into a PDB file. The distribution of
vectors are represented by H atoms and are all connected using PDB CONECT
records. Each H atom is connected to its two neighbours on the both the
longitude and latitude. This creates a geometric PDB object with
longitudinal and latitudinal lines.
"""
uf.backend = generic_fns.structure.geometric.create_diff_tensor_pdb
-uf.menu_text = "create_diff_&tensor_pdb"
+uf.menu_text = "&create_diff_tensor_pdb"
uf.gui_icon = "oxygen.actions.list-add-relax-blue"
uf.wizard_height_desc = 400
uf.wizard_size = (900, 800)
@@ -265,7 +265,7 @@
Because of the symmetry of the diffusion tensor reversing the orientation of
the XH bond vector has no effect. Therefore by setting the symmetry flag two
chains 'A' and 'B' will be added to the PDB file whereby chain 'B' is chain
'A' with the XH bonds reversed.
"""
uf.backend = generic_fns.structure.geometric.create_vector_dist
-uf.menu_text = "create_&vector_dist"
+uf.menu_text = "cr&eate_vector_dist"
uf.gui_icon = "oxygen.actions.list-add-relax-blue"
uf.wizard_height_desc = 400
uf.wizard_size = (900, 700)
@@ -393,7 +393,7 @@
relax> structure.displacement(model_from=2, model_to=3)
"""
uf.backend = generic_fns.structure.main.displacement
-uf.menu_text = "&displacement"
+uf.menu_text = "displace&ment"
uf.wizard_height_desc = 400
uf.wizard_size = (900, 700)
uf.wizard_image = WIZARD_IMAGE_PATH + 'structure' + sep + '2JK4.png'
r16284 - /branches/uf_redesign/user_functions/