r16714 - /branches/uf_redesign/user_functions/relax_data.py -- June 07, 2012 - 11:21

Author: bugman
Date: Thu Jun  7 11:21:21 2012
New Revision: 16714

URL: http://svn.gna.org/viewcvs/relax?rev=16714&view=rev
Log:
Big expansion and improvements of the relax_data.temp_calibration user 
function definition.


Modified:
    branches/uf_redesign/user_functions/relax_data.py

Modified: branches/uf_redesign/user_functions/relax_data.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/user_functions/relax_data.py?rev=16714&r1=16713&r2=16714&view=diff
==============================================================================
--- branches/uf_redesign/user_functions/relax_data.py (original)
+++ branches/uf_redesign/user_functions/relax_data.py Thu Jun  7 11:21:21 2012
@@ -393,8 +393,8 @@
 
 # The relax_data.temp_calibration user function.
 uf = uf_info.add_uf('relax_data.temp_calibration')
-uf.title = "Specify the temperature calibration method used."
-uf.title_short = "Setting temperature calibration method."
+uf.title = "Specify the per-experiment temperature calibration method used."
+uf.title_short = "The per-experiment temperature calibration method."
 uf.add_keyarg(
     name = "ri_id",
     py_type = "str",
@@ -407,8 +407,8 @@
 uf.add_keyarg(
     name = "method",
     py_type = "str",
-    desc_short = "temperature calibration method",
-    desc = "The calibration method.",
+    desc_short = "per-experiment calibration method",
+    desc = "The per-experiment temperature calibration method.",
     wiz_element_type = 'combo',
     wiz_combo_choices = [
         'methanol',
@@ -418,16 +418,19 @@
 )
 # Description.
 uf.desc.append(Desc_container())
-uf.desc[-1].add_paragraph("This is essential for BMRB data deposition.  The 
currently allowed methods are:")
+uf.desc[-1].add_paragraph("For the proper measurement of relaxation data, 
per-experiment temperature calibration is essential.  This user function is 
not for inputting standard MeOH/ethylene glycol/etc. calibration of a 
spectrometer - this temperature setting is of no use when you are running 
experiments which pump in large amounts of power into the probe head.")
+uf.desc[-1].add_paragraph("The R1 experiment should be about the same 
temperature as a HSQC and hence be close to the standard MeOH/ethylene glycol 
sepectrometer calibration.  However the R2 CPMG or spin lock and, to a lesser 
extent, the NOE pre-saturation pump a lot more power into the probe head.  
The power differences can either cause the temperature in the sample to be 
too high or too low.  This is unpredictable as the thermometer used by the VT 
unit is next to the coils in the probe head and not inside the NMR sample.  
So the VT unit tries to control the temperature inside the probe head rather 
than in the NMR sample.  However between the thermometer and the sample is 
the water of the sample, the glass of the NMR tube, the air gap where the VT 
unit controls air flow and the outside components of the probe head 
protecting the electronics.  If the sample, the probe head or the VT unit is 
changed, this will have a different affect on the per-experiment temperature. 
 The VT unit responds differently under different conditions and may 
sometimes over or under compensate by a couple of degrees.  Therefore each 
relaxation data set from each spectrometer requires a per-experiment 
calibration.")
+uf.desc[-1].add_paragraph("The per-experiment calibration method used needs 
to be specified for BMRB data deposition.  The currently allowed methods 
are:")
 uf.desc[-1].add_list_element("'methanol',")
 uf.desc[-1].add_list_element("'monoethylene glycol',")
 uf.desc[-1].add_list_element("'no calibration applied'.")
-uf.desc[-1].add_paragraph("Other strings will be accepted if supplied.")
+uf.desc[-1].add_paragraph("Other methods will be accepted if supplied.")
 uf.backend = relax_data.temp_calibration
 uf.menu_text = "&temp_calibration"
 uf.gui_icon = "oxygen.status.weather-clear"
-uf.wizard_size = (900, 500)
-uf.wizard_image = WIZARD_IMAGE_PATH + 'fid.png'
+uf.wizard_size = (1000, 800)
+uf.wizard_height_desc = 500
+uf.wizard_image = WIZARD_IMAGE_PATH + 'oxygen-icon-weather-clear.png'
 
 
 # The relax_data.temp_control user function.