Author: bugman
Date: Thu Jun 7 11:37:26 2012
New Revision: 16716
URL: http://svn.gna.org/viewcvs/relax?rev=16716&view=rev
Log:
Big expansion and improvements of the relax_data.temp_control user function
definition.
There are also a few edits of the relax_data.temp_calibration definition.
Modified:
branches/uf_redesign/user_functions/relax_data.py
Modified: branches/uf_redesign/user_functions/relax_data.py
URL:
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/user_functions/relax_data.py?rev=16716&r1=16715&r2=16716&view=diff
==============================================================================
--- branches/uf_redesign/user_functions/relax_data.py (original)
+++ branches/uf_redesign/user_functions/relax_data.py Thu Jun 7 11:37:26 2012
@@ -420,7 +420,7 @@
uf.desc.append(Desc_container())
uf.desc[-1].add_paragraph("For the proper measurement of relaxation data,
per-experiment temperature calibration is essential. This user function is
not for inputting standard MeOH/ethylene glycol/etc. calibration of a
spectrometer - this temperature setting is of no use when you are running
experiments which pump in large amounts of power into the probe head.")
uf.desc[-1].add_paragraph("The R1 experiment should be about the same
temperature as a HSQC and hence be close to the standard MeOH/ethylene glycol
sepectrometer calibration. However the R2 CPMG or spin lock and, to a lesser
extent, the NOE pre-saturation pump a lot more power into the probe head.
The power differences can either cause the temperature in the sample to be
too high or too low. This is unpredictable as the thermometer used by the VT
unit is next to the coils in the probe head and not inside the NMR sample.
So the VT unit tries to control the temperature inside the probe head rather
than in the NMR sample. However between the thermometer and the sample is
the water of the sample, the glass of the NMR tube, the air gap where the VT
unit controls air flow and the outside components of the probe head
protecting the electronics. If the sample, the probe head or the VT unit is
changed, this will have a different affect on the per-experiment temperature.
The VT unit responds differently under different conditions and may
sometimes over or under compensate by a couple of degrees. Therefore each
relaxation data set from each spectrometer requires a per-experiment
calibration.")
-uf.desc[-1].add_paragraph("The per-experiment calibration method used needs
to be specified for BMRB data deposition. The currently allowed methods
are:")
+uf.desc[-1].add_paragraph("Specifying the per-experiment calibration method
is needed for BMRB data deposition. The currently allowed methods are:")
uf.desc[-1].add_list_element("'methanol',")
uf.desc[-1].add_list_element("'monoethylene glycol',")
uf.desc[-1].add_list_element("'no calibration applied'.")
@@ -436,7 +436,7 @@
# The relax_data.temp_control user function.
uf = uf_info.add_uf('relax_data.temp_control')
uf.title = "Specify the temperature control method used."
-uf.title_short = "Setting temperature control method."
+uf.title_short = "The temperature control method."
uf.add_keyarg(
name = "ri_id",
py_type = "str",
@@ -464,7 +464,9 @@
)
# Description.
uf.desc.append(Desc_container())
-uf.desc[-1].add_paragraph("This is essential for BMRB data deposition. The
currently allowed methods are:")
+uf.desc[-1].add_paragraph("For the proper measurement of relaxation data,
explicit temperature control techniques are essential. A number of factors
can cause significant temperature fluctuations between individual relaxation
experiments. This includes the daily temperature cycle of the room housing
the spectrometer, different amounts of power for the individual experiments,
. The best methods for eliminating such problems are single scan
interleaving and the application of off-resonance temperature compensation")
+uf.desc[-1].add_paragraph("The best methods for eliminating such problems
are single scan interleaving and temperature compensation block. Single scan
interleaving is the most powerful technique for averaging the temperature
fluctuations not only across different experiments, but also across the
entire measurement time. The application of off-resonance temperature
compensation blocks at the start of the experiment is useful for the R2 and
will normalise the temperature between the individual experiments, but single
scan or single fid interleaving is nevertheless required for normalising the
temperature across the entire measurement.")
+uf.desc[-1].add_paragraph("Specifying the temperature control method is
needed for BMRB data deposition. The currently allowed methods are:")
uf.desc[-1].add_list_element("'single scan interleaving',")
uf.desc[-1].add_list_element("'temperature compensation block',")
uf.desc[-1].add_list_element("'single scan interleaving and temperature
compensation block',")
@@ -474,8 +476,9 @@
uf.backend = relax_data.temp_control
uf.menu_text = "temp_contro&l"
uf.gui_icon = "oxygen.status.weather-clear"
-uf.wizard_size = (700, 500)
-uf.wizard_image = WIZARD_IMAGE_PATH + 'fid.png'
+uf.wizard_size = (1000, 800)
+uf.wizard_height_desc = 500
+uf.wizard_image = WIZARD_IMAGE_PATH + 'oxygen-icon-weather-clear.png'
# The relax_data.type user function.
r16716 - /branches/uf_redesign/user_functions/relax_data.py