r17359 - /trunk/docs/latex/intro.tex -- August 28, 2012 - 16:03

Author: bugman
Date: Tue Aug 28 16:03:18 2012
New Revision: 17359

URL: http://svn.gna.org/viewcvs/relax?rev=17359&view=rev
Log:
Improvements to the 'Supported NMR theories' section of the user manual 
introduction.

This includes the addition of the Morin and Gagne 2009 reference!!!


Modified:
    trunk/docs/latex/intro.tex

Modified: trunk/docs/latex/intro.tex
URL: 
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/intro.tex?rev=17359&r1=17358&r2=17359&view=diff
==============================================================================
--- trunk/docs/latex/intro.tex (original)
+++ trunk/docs/latex/intro.tex Tue Aug 28 16:03:18 2012
@@ -6,8 +6,8 @@
 The program relax is designed for the study of molecular dynamics through 
the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, 
sugars, and other biomolecules are all supported. It was originally written 
for the model-free analysis of protein dynamics, though its scope has been 
significantly expanded.  It is a community driven project created by NMR 
spectroscopists for NMR spectroscopists.  It supports many analysis types 
including:
 
 \begin{description}
-\item[Model-free analysis] - the Lipari and Szabo model-free analysis of NMR 
relaxation data.
-\item[$\Rone$ and $\Rtwo$] - the exponential curve fitting for the 
calculation of the Rx NMR relaxation rates.
+\item[Model-free analysis] - the Lipari and Szabo model-free analysis of NMR 
relaxation data
+\item[$\Rone$ and $\Rtwo$] - the exponential curve fitting for the 
calculation of the R$_x$ NMR relaxation rates.
 \item[NOE] - the calculation of the steady-state NOE NMR relaxation data.
 \item[Data consistency] - the consistency testing of multiple field NMR 
relaxation data.
 \item[RSDM] - Reduced Spectral Density Mapping.
@@ -46,15 +46,16 @@
 The following relaxation data analysis techniques are currently supported by 
relax:
 
 \begin{itemize}
-\item Model-free analysis \citep{LipariSzabo82a, LipariSzabo82b, Clore90a}.
+\item Model-free analysis (\citet{LipariSzabo82a, LipariSzabo82b, Clore90a} 
and the specific implementation of 
\citet{dAuvergneGooley03,dAuvergneGooley06,dAuvergneGooley07,dAuvergneGooley08a,dAuvergneGooley08b}).
 \item Reduced spectral density mapping \citep{Farrow95, 
Lefevre96}\index{reduced spectral density mapping}.
+\item Consistency testing -- the validation of multiple field NMR relaxation 
data \citep{MorinGagne09}.
 \item Exponential curve fitting (to find the $\Rone$ and $\Rtwo$ relaxation 
rates)\index{exponential curve fitting}.
 \item Steady-state NOE calculation\index{NOE}.
-\item Determination of absolute stereochemistry of flexible molecules using 
isotropic and anisotropic NMR parameters such as NOE, ROE, and RDC combined 
with MD simulation or simulated annealing, and ORD (see \citet{Sun11}).
+\item Determination of absolute stereochemistry of flexible molecules via 
the N-state model using isotropic and anisotropic NMR parameters such as NOE, 
ROE, and RDC combined with MD simulation or simulated annealing, and ORD 
\citep{Sun11}.
 \item The N-state model for investigating domain motions.
 \item The frame order theory.
-\item Conformational analysis of paramagnetically tagged molecules (see 
\citet{Erdelyi11}).
-\item Analysis of RDCs and PCSs using ensemble of structures (the N-state 
model of dynamics).
+\item Conformational analysis of paramagnetically tagged molecules via the 
N-state model \citep{Erdelyi11}.
+\item Analysis and comparison of ensembles of structures using RDCs, PCSs, 
NOEs, etc. (the N-state model of dynamics).
 \end{itemize}