Author: bugman
Date: Wed Aug 29 12:36:38 2012
New Revision: 17386
URL: http://svn.gna.org/viewcvs/relax?rev=17386&view=rev
Log:
Better figure layout in the NOE chapter of the user manual.
Modified:
trunk/docs/latex/noe.tex
Modified: trunk/docs/latex/noe.tex
URL:
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/noe.tex?rev=17386&r1=17385&r2=17386&view=diff
==============================================================================
--- trunk/docs/latex/noe.tex (original)
+++ trunk/docs/latex/noe.tex Wed Aug 29 12:36:38 2012
@@ -211,35 +211,35 @@
% Viewing the results.
%%%%%%%%%%%%%%%%%%%%%%
-\section{Viewing the results}
-
-Any two dimensional data set can be plotted in relax in conjunction with the
program
\href{http://plasma-gate.weizmann.ac.il/Grace/}{Grace}\index{software!Grace|textbf}.
The program is also known as Xmgrace and was previously known as ACE/gr or
Xmgr. The highly flexible relax user function \texttt{grace.write} is
capable of producing 2D plots of any x-y data sets. The three commands
-
-\begin{exampleenv}
-grace.write(y\_data\_type=`ref', file=`ref.agr', force=True) \\
-grace.write(y\_data\_type=`sat', file=`sat.agr', force=True) \\
-grace.write(y\_data\_type=`noe', file=`noe.agr', force=True)
-\end{exampleenv}
-
-create three separate plots of the peak intensity of the reference and
saturated spectra as well as the NOE. The x-axis in all three defaults to
the residue number. As the x and y-axes can be any parameter the command
-
-\example{grace.write(x\_data\_type=`ref', y\_data\_type=`sat',
file=`ref\_vs\_sat.agr', force=True)}
-
-would create a plot of the reference verses the saturated intensity with one
point per residue. Returning to the sample script three Grace data files are
created \texttt{ref.agr}, \texttt{sat.agr}, and \texttt{noe.agr} and placed
in the default directory \texttt{./grace}. These can be visualised by
opening the file within Grace. However relax will do that for you with the
commands
-
-\begin{exampleenv}
-grace.view(file=`ref.agr') \\
-grace.view(file=`sat.agr') \\
-grace.view(file=`noe.agr')
-\end{exampleenv}
-
-An example of the output after modifying the axes is shown in
figure~\ref{fig: NOE plot}.
-
\begin{figure}
\centerline{\includegraphics[width=0.8\textwidth, bb=0 0 792
612]{images/noe.eps.gz}}
\caption[NOE plot]{A Grace\index{software!Grace|textbf} plot of the NOE
value and error against the residue number. This is an example of the output
of the user function \texttt{grace.write()}.}\label{fig: NOE plot}
\end{figure}
+
+\section{Viewing the results}
+
+Any two dimensional data set can be plotted in relax in conjunction with the
program
\href{http://plasma-gate.weizmann.ac.il/Grace/}{Grace}\index{software!Grace|textbf}.
The program is also known as Xmgrace and was previously known as ACE/gr or
Xmgr. The highly flexible relax user function \texttt{grace.write} is
capable of producing 2D plots of any x-y data sets. The three commands
+
+\begin{exampleenv}
+grace.write(y\_data\_type=`ref', file=`ref.agr', force=True) \\
+grace.write(y\_data\_type=`sat', file=`sat.agr', force=True) \\
+grace.write(y\_data\_type=`noe', file=`noe.agr', force=True)
+\end{exampleenv}
+
+create three separate plots of the peak intensity of the reference and
saturated spectra as well as the NOE. The x-axis in all three defaults to
the residue number. As the x and y-axes can be any parameter the command
+
+\example{grace.write(x\_data\_type=`ref', y\_data\_type=`sat',
file=`ref\_vs\_sat.agr', force=True)}
+
+would create a plot of the reference verses the saturated intensity with one
point per residue. Returning to the sample script three Grace data files are
created \texttt{ref.agr}, \texttt{sat.agr}, and \texttt{noe.agr} and placed
in the default directory \texttt{./grace}. These can be visualised by
opening the file within Grace. However relax will do that for you with the
commands
+
+\begin{exampleenv}
+grace.view(file=`ref.agr') \\
+grace.view(file=`sat.agr') \\
+grace.view(file=`noe.agr')
+\end{exampleenv}
+
+An example of the output after modifying the axes is shown in
figure~\ref{fig: NOE plot}.
% GUI.
r17386 - /trunk/docs/latex/noe.tex