r17442 - /trunk/docs/latex/data_model.tex -- September 03, 2012 - 23:07

Author: bugman
Date: Mon Sep  3 23:07:07 2012
New Revision: 17442

URL: http://svn.gna.org/viewcvs/relax?rev=17442&view=rev
Log:
Small edits of the relax data model chapter of the user manual.


Modified:
    trunk/docs/latex/data_model.tex

Modified: trunk/docs/latex/data_model.tex
URL: 
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/data_model.tex?rev=17442&r1=17441&r2=17442&view=diff
==============================================================================
--- trunk/docs/latex/data_model.tex (original)
+++ trunk/docs/latex/data_model.tex Mon Sep  3 23:07:07 2012
@@ -164,10 +164,10 @@
 Below are three different examples showing how to set up the relax data 
model for any analysis type requiring spin specific data.
 
 
-% Structural data.
-%~~~~~~~~~~~~~~~~~
-
-\subsection{Structural data} \label{sect: script - structural data}
+% Spins from structural data.
+%~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+\subsection{Spins from structural data} \label{sect: script - structural 
data}
 
 \begin{figure*}[h]
 \includegraphics[width=3cm, bb=0 0 1701 
1701]{graphics/misc/n_state_model/phthalic_acid_ens_600x600.eps.gz}
@@ -201,16 +201,16 @@
 
 
 
-% Sequence file.
-%~~~~~~~~~~~~~~~
-
-\subsection{Sequence file} \label{sect: script - sequence file}
+% Spins from a sequence file.
+%~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+\subsection{Spins from a sequence file} \label{sect: script - sequence file}
 
 \begin{figure*}[h]
 \includegraphics[width=3cm, bb=0 0 1701 
1701]{graphics/misc/sequence_600x600.eps.gz}
 \end{figure*}
 
-Alternatively to setting up the molecule, residue, and spin containers via 
3D structural data, a plain text columnar formatted file can be used.  This 
is useful for when no 3D structure exists for the molecule.  For example:
+Alternatively to setting up the molecule, residue, and spin containers via 
3D structural data, a plain text columnar formatted file can be used.  This 
is useful for when no 3D structure exists for the molecule.  It also has the 
advantage that the residue and atom names need not conform to the PDB 
standard.  An example for reading sequence data is:
 
 \begin{exampleenv}
 \# Create a data pipe. \\
@@ -268,10 +268,10 @@
 
 
 
-% Structural data.
-%~~~~~~~~~~~~~~~~~
-
-\subsection{Structural data} \label{sect: GUI - structural data}
+% Spins from structural data.
+%~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+\subsection{Spins from structural data} \label{sect: GUI - structural data}
 
 For this section, the example of protein $^{15}$N relaxation data will be 
used to illustrate how to set up the data structures.  To manipulate the 
molecule, residue and spin data structures in the GUI, the most convenient 
option is to use the spin viewer window (see Figure~\ref{fig: screenshot: 
spin viewer} on page~\pageref{fig: screenshot: spin viewer}).  This window 
can be opened in four ways:
 
@@ -330,10 +330,10 @@
 
 
 
-% Sequence file.
-%~~~~~~~~~~~~~~~
-
-\subsection{Sequence file} \label{sect: GUI - sequence file}
+% Spins from a sequence file.
+%~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+\subsection{Spins from a sequence file} \label{sect: GUI - sequence file}
 
 Starting from the empty spin viewer window on page~\pageref{figure: spin 
viewer blank}), click on the \guibutton{Load spins} button.  You will then 
see the spin loading wizard (see page~\pageref{figure: spin viewer wizard 
start}).  Select the option for reading data from a sequence file.  You 
should then see: