Author: bugman
Date: Tue Sep 4 16:53:06 2012
New Revision: 17448
URL: http://svn.gna.org/viewcvs/relax?rev=17448&view=rev
Log:
Some editing of the NOE chapter of the relax user manual.
Modified:
trunk/docs/latex/noe.tex
Modified: trunk/docs/latex/noe.tex
URL:
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/noe.tex?rev=17448&r1=17447&r2=17448&view=diff
==============================================================================
--- trunk/docs/latex/noe.tex (original)
+++ trunk/docs/latex/noe.tex Tue Sep 4 16:53:06 2012
@@ -253,7 +253,7 @@
%~~~~~~~~~~~~~~~~~~~~~
\begin{figure}
-\centerline{\includegraphics[width=0.8\textwidth, bb=0 0 792
612]{images/noe.eps.gz}}
+\centerline{\includegraphics[width=0.9\textwidth, bb=0 -1 826
521]{graphics/screenshots/noe_analysis/grace.eps.gz}}
\caption[NOE plot]{A Grace\index{software!Grace|textbf} plot of the NOE
value and error against the residue number. This is an example of the output
of the user function \uf{grace.write}.}\label{fig: NOE plot}
\end{figure}
@@ -291,9 +291,9 @@
The relax graphical user interface provides access to an automated
steady-state NOE analysis. This auto-analysis operates in the same way as
the sample script described earlier in this chapter. In this example, relax
will be launched with:
-\example{\$ relax --log noe.log --gui}
-
-The \prompt{--log} command line argument will cause all of relax's text
printouts to be placed into the \file{noe.log} file which can serve as a
record for later reference (the \prompt{--tee} command line argument could be
used as well).
+\example{\$ relax --log log --gui}
+
+The \prompt{--log} command line argument will cause all of relax's text
printouts to be placed into the \file{log} file which can serve as a record
for later reference (the \prompt{--tee} command line argument could be used
as well).
% Initialisation of the data pipe.
@@ -335,7 +335,7 @@
\subsection{Setting up the spin systems}
-Just as in the prompt and scripting UI modes, the molecule, residue and spin
data structures need to be set up prior to the loading of any spin specific
data. The \gui{Spin systems} GUI element is used for this purpose. Before
any spin systems have been set up, this should say something like \gui{0
spins loaded and selected}. To fix this, click on the \guibutton{Spin
editor} button and you should then see the spin viewer window. The next
steps are fully described in section~\ref{sect: GUI - structural data} on
page~\pageref{sect: GUI - structural data} for PDB files or
section~\ref{sect: GUI - structural data} on page~\pageref{sect: GUI -
structural data} for a sequence file. The spin viewer window can now be
closed.
+Just as in the prompt and scripting UI modes, the molecule, residue and spin
data structures need to be set up prior to the loading of any spin specific
data. The \gui{Spin systems} GUI element is used for this purpose. Before
any spin systems have been set up, this should say something like \gui{0
spins loaded and selected}. To fix this, click on the \guibutton{Spin
editor} button and you should then see the spin viewer window. The next
steps are fully described in section~\ref{sect: GUI - structural data} on
page~\pageref{sect: GUI - structural data} for PDB files or
section~\ref{sect: GUI - sequence file} on page~\pageref{sect: GUI - sequence
file} for a sequence file. The spin viewer window can now be closed.
% Unresolved spins.
r17448 - /trunk/docs/latex/noe.tex