Author: bugman
Date: Tue Oct 16 10:14:19 2012
New Revision: 17824
URL: http://svn.gna.org/viewcvs/relax?rev=17824&view=rev
Log:
Merged revisions 17295,17332,17337-17359 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/trunk
........
r17295 | bugman | 2012-07-23 15:44:47 +0200 (Mon, 23 Jul 2012) | 3 lines
Alphabetical ordering of the imports.
........
r17332 | bugman | 2012-08-15 16:38:48 +0200 (Wed, 15 Aug 2012) | 7 lines
Redesign of how the GPL license is presented to the user.
The old prompt.gpl module with the version 2 of the license has been
deleted. Now the text form the
docs/COPYING file is passed through pydoc.pager for the './relax --licence'
and the prompt mode GPL
object, and is simply printed to STDOUT for the GUI help system.
........
r17337 | bugman | 2012-08-27 11:05:17 +0200 (Mon, 27 Aug 2012) | 5 lines
Rewrote the relaxation curve-fitting chapter of the relax manual.
This chapter was quite out of date and was of no use to modern relax
versions!
........
r17338 | bugman | 2012-08-27 11:09:07 +0200 (Mon, 27 Aug 2012) | 3 lines
Small fix for the sample script in the NOE chapter of the relax manual.
........
r17339 | bugman | 2012-08-27 11:11:23 +0200 (Mon, 27 Aug 2012) | 3 lines
Small fix for the sample script in the relaxation curve-fitting chapter of
the relax manual.
........
r17340 | bugman | 2012-08-27 11:43:17 +0200 (Mon, 27 Aug 2012) | 6 lines
The fetch_docstrings.py now adds LaTeX labels to each user function section.
This has the form of 'uf: ' followed by the user function name, and is for
referencing purposes
within the main text.
........
r17341 | bugman | 2012-08-27 11:55:55 +0200 (Mon, 27 Aug 2012) | 3 lines
Added screenshots of Xmgrace displaying relaxation curves.
........
r17342 | bugman | 2012-08-27 11:58:38 +0200 (Mon, 27 Aug 2012) | 5 lines
Improvements to the final section of the relaxation curve-fitting chapter.
The Xmgrace screenshot and page references for the user functions have been
added.
........
r17343 | bugman | 2012-08-27 12:06:44 +0200 (Mon, 27 Aug 2012) | 3 lines
Small fix for the model-free chapter of the relax manual.
........
r17344 | bugman | 2012-08-27 12:25:29 +0200 (Mon, 27 Aug 2012) | 5 lines
Modified the graphics.fetch_icon function to return different file formats.
This will be used for the relax manual where eps.gz files are required.
........
r17345 | bugman | 2012-08-27 16:32:14 +0200 (Mon, 27 Aug 2012) | 6 lines
Large expansion of the Oxygen icons within relax.
All 128x128 versions of the icons used by the user functions have been
added as both PNG and gzipped
EPS files. A number of gzipped SVG icons has been added as well.
........
r17346 | bugman | 2012-08-27 16:35:03 +0200 (Mon, 27 Aug 2012) | 6 lines
Large expansion of the relax icon set.
All 128x128 versions of the icons used by the user functions have been
added as both PNG and gzipped
EPS files. A few gzipped SVG and non-sized icons have been added as well.
........
r17347 | bugman | 2012-08-27 19:10:54 +0200 (Mon, 27 Aug 2012) | 9 lines
Redesigned the formatting of the user function chapter of the relax manual.
The fetch_docstrings.py now forces each user function to start in a new
column. This increases the
size of the manual, but makes the reading of the user function
documentation much easier. The user
function class and function icons (128x128 format) are now placed between
the top bar and the
subsection title and are left and right justified. This prettification
simply allows the user
functions to be more quickly identified.
........
r17348 | bugman | 2012-08-27 19:59:38 +0200 (Mon, 27 Aug 2012) | 3 lines
Removed some now useless whitespace from the top of each user function
subsection of the manual.
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r17349 | bugman | 2012-08-28 14:01:17 +0200 (Tue, 28 Aug 2012) | 3 lines
Created EPS versions of a number of wizard graphics for use in the user
manual.
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r17350 | bugman | 2012-08-28 14:21:35 +0200 (Tue, 28 Aug 2012) | 3 lines
Updated the screenshot of the pipe editor window.
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r17351 | bugman | 2012-08-28 14:50:55 +0200 (Tue, 28 Aug 2012) | 3 lines
Updates to the generic_fns.mol_res_spin.id_string_doc documentation
structure.
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r17352 | bugman | 2012-08-28 14:51:57 +0200 (Tue, 28 Aug 2012) | 5 lines
The user manual now specifies the repository revision if a non-tagged
version is built.
This enables easier tracking and editing of the manual.
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r17353 | bugman | 2012-08-28 14:52:30 +0200 (Tue, 28 Aug 2012) | 3 lines
Updates and small expansion of the intro chapter of the relax user manual.
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r17354 | bugman | 2012-08-28 15:20:27 +0200 (Tue, 28 Aug 2012) | 3 lines
Converted some more wizard graphics to the EPS format for the user manual.
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r17355 | bugman | 2012-08-28 15:23:43 +0200 (Tue, 28 Aug 2012) | 3 lines
Fix for the pipe editor window screenshot width in the relax manual.
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r17356 | bugman | 2012-08-28 15:32:04 +0200 (Tue, 28 Aug 2012) | 3 lines
Created a new chapter for the relax user manual titled 'The relax data
model'.
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r17357 | bugman | 2012-08-28 15:32:31 +0200 (Tue, 28 Aug 2012) | 3 lines
Added some more abbreviations to the relax user manual.
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r17358 | bugman | 2012-08-28 15:59:16 +0200 (Tue, 28 Aug 2012) | 3 lines
Added the Morin and Gagne 2009 reference for the consistency testing.
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r17359 | bugman | 2012-08-28 16:03:18 +0200 (Tue, 28 Aug 2012) | 5 lines
Improvements to the 'Supported NMR theories' section of the user manual
introduction.
This includes the addition of the Morin and Gagne 2009 reference!!!
........
Added:
branches/frame_order_testing/docs/latex/data_model.tex
- copied unchanged from r17359, trunk/docs/latex/data_model.tex
branches/frame_order_testing/graphics/oxygen_icons/128x128/
- copied from r17359, trunk/graphics/oxygen_icons/128x128/
branches/frame_order_testing/graphics/oxygen_icons/scalable/
- copied from r17359, trunk/graphics/oxygen_icons/scalable/
branches/frame_order_testing/graphics/relax_icons/128x128/
- copied from r17359, trunk/graphics/relax_icons/128x128/
branches/frame_order_testing/graphics/relax_icons/png/opendx.png
- copied unchanged from r17359,
trunk/graphics/relax_icons/png/opendx.png
branches/frame_order_testing/graphics/screenshots/xmgrace_peak_intensities.eps.gz
- copied unchanged from r17359,
trunk/graphics/screenshots/xmgrace_peak_intensities.eps.gz
branches/frame_order_testing/graphics/screenshots/xmgrace_peak_intensities.png
- copied unchanged from r17359,
trunk/graphics/screenshots/xmgrace_peak_intensities.png
branches/frame_order_testing/graphics/wizards/dipole_pair/NH_dipole_pair.eps.gz
- copied unchanged from r17359,
trunk/graphics/wizards/dipole_pair/NH_dipole_pair.eps.gz
branches/frame_order_testing/graphics/wizards/molecule.eps.gz
- copied unchanged from r17359, trunk/graphics/wizards/molecule.eps.gz
branches/frame_order_testing/graphics/wizards/n_state_model.eps.gz
- copied unchanged from r17359,
trunk/graphics/wizards/n_state_model.eps.gz
branches/frame_order_testing/graphics/wizards/pipe.eps.gz
- copied unchanged from r17359, trunk/graphics/wizards/pipe.eps.gz
branches/frame_order_testing/graphics/wizards/pipe_bundle.eps.gz
- copied unchanged from r17359,
trunk/graphics/wizards/pipe_bundle.eps.gz
branches/frame_order_testing/graphics/wizards/residue.eps.gz
- copied unchanged from r17359, trunk/graphics/wizards/residue.eps.gz
branches/frame_order_testing/graphics/wizards/sequence.eps.gz
- copied unchanged from r17359, trunk/graphics/wizards/sequence.eps.gz
branches/frame_order_testing/graphics/wizards/spin.eps.gz
- copied unchanged from r17359, trunk/graphics/wizards/spin.eps.gz
Removed:
branches/frame_order_testing/prompt/gpl.py
Modified:
branches/frame_order_testing/ (props changed)
branches/frame_order_testing/docs/latex/bibliography.bib
branches/frame_order_testing/docs/latex/curvefit.tex
branches/frame_order_testing/docs/latex/fetch_docstrings.py
branches/frame_order_testing/docs/latex/intro.tex
branches/frame_order_testing/docs/latex/model-free.tex
branches/frame_order_testing/docs/latex/noe.tex
branches/frame_order_testing/docs/latex/relax.tex
branches/frame_order_testing/generic_fns/mol_res_spin.py
branches/frame_order_testing/graphics/__init__.py
branches/frame_order_testing/graphics/relax_icons/svg/structure.svg
branches/frame_order_testing/graphics/screenshots/pipe_editor.eps.gz
branches/frame_order_testing/graphics/screenshots/pipe_editor.png
branches/frame_order_testing/gui/menu.py
branches/frame_order_testing/prompt/__init__.py
branches/frame_order_testing/prompt/interpreter.py
branches/frame_order_testing/relax.py
branches/frame_order_testing/scons/manuals.py
branches/frame_order_testing/specific_fns/n_state_model.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/frame_order_testing/docs/latex/bibliography.bib
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/docs/latex/bibliography.bib?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/docs/latex/curvefit.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/docs/latex/curvefit.tex?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/docs/latex/fetch_docstrings.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/docs/latex/fetch_docstrings.py?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/docs/latex/intro.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/docs/latex/intro.tex?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/docs/latex/model-free.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/docs/latex/model-free.tex?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/docs/latex/noe.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/docs/latex/noe.tex?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/docs/latex/relax.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/docs/latex/relax.tex?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/generic_fns/mol_res_spin.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/mol_res_spin.py?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/graphics/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/graphics/__init__.py?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/graphics/relax_icons/svg/structure.svg
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/graphics/relax_icons/svg/structure.svg?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/graphics/screenshots/pipe_editor.eps.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/graphics/screenshots/pipe_editor.eps.gz?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/graphics/screenshots/pipe_editor.png
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/graphics/screenshots/pipe_editor.png?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/gui/menu.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/gui/menu.py?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/prompt/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/prompt/__init__.py?rev=17824&r1=17823&r2=17824&view=diff
Removed: branches/frame_order_testing/prompt/gpl.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/prompt/gpl.py?rev=17823&view=auto
Modified: branches/frame_order_testing/prompt/interpreter.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/prompt/interpreter.py?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/relax.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/relax.py?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/scons/manuals.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/scons/manuals.py?rev=17824&r1=17823&r2=17824&view=diff
Modified: branches/frame_order_testing/specific_fns/n_state_model.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/specific_fns/n_state_model.py?rev=17824&r1=17823&r2=17824&view=diff
r17824 - in /branches/frame_order_testing: ./ docs/latex/ generic_fns/ graphics/ graphics/oxygen_icons/128x128/ graphics/oxy...
