r18207 - in /branches/frame_order_testing: ./ data/ generic_fns/ test_suite/shared_data/saved_states/ test_suite/system_test... -- January 15, 2013 - 21:24

Author: bugman
Date: Tue Jan 15 21:24:17 2013
New Revision: 18207

URL: http://svn.gna.org/viewcvs/relax?rev=18207&view=rev
Log:
Merged revisions 18200-18206 via svnmerge from 
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/trunk

........
  r18200 | bugman | 2013-01-14 17:54:34 +0100 (Mon, 14 Jan 2013) | 5 lines
  
  Added checks for the RDC data in the State.test_align_tensor_with_mc_sims 
system test.
  
  This is to be sure that the data is properly converted from the old design.
........
  r18201 | bugman | 2013-01-14 17:56:26 +0100 (Mon, 14 Jan 2013) | 6 lines
  
  RDC data fix for the _back_compat_hook() method for converting old relax 
state and results files.
  
  The RDC data was not being shifted into the corresponding interatomic data 
container and remained in
  the spin containers.
........
  r18202 | bugman | 2013-01-15 12:46:17 +0100 (Tue, 15 Jan 2013) | 8 lines
  
  Added the 'empty' flag to the sequence.copy user function to allow all the 
spin contents to be copied.
  
  The user function was only copying the basic empty molecule, residue and 
spin containers, in contrast
  to the interatomic.copy user function which copies all of the container 
contents as well.  This new
  flag is for backwards compatibility - it allows old scripts to operate as 
before while enabling the
  new functionality.
........
  r18203 | bugman | 2013-01-15 17:04:00 +0100 (Tue, 15 Jan 2013) | 5 lines
  
  Removed the check for the 3D structural data in the paramag.centre user 
function.
  
  This check is not needed.
........
  r18204 | bugman | 2013-01-15 20:22:31 +0100 (Tue, 15 Jan 2013) | 6 lines
  
  Implemented the pcs.structural_noise user function.
  
  This is used to determine the PCS error due to structural noise via 
simulation, and adds the error
  via variance addition to the experimental PCS error.
........
  r18205 | bugman | 2013-01-15 20:54:57 +0100 (Tue, 15 Jan 2013) | 3 lines
  
  Created the Pcs.test_structural_noise system test for the new 
pcs.structural_noise user function.
........
  r18206 | bugman | 2013-01-15 21:05:29 +0100 (Tue, 15 Jan 2013) | 3 lines
  
  Fix for the pcs.structural_noise user function - old structural errors were 
not correctly removed.
........

Added:
    
branches/frame_order_testing/test_suite/shared_data/saved_states/pcs_structural_noise_test.bz2
      - copied unchanged from r18206, 
trunk/test_suite/shared_data/saved_states/pcs_structural_noise_test.bz2
Modified:
    branches/frame_order_testing/   (props changed)
    branches/frame_order_testing/data/__init__.py
    branches/frame_order_testing/generic_fns/paramag.py
    branches/frame_order_testing/generic_fns/pcs.py
    branches/frame_order_testing/generic_fns/sequence.py
    branches/frame_order_testing/test_suite/system_tests/pcs.py
    branches/frame_order_testing/test_suite/system_tests/state.py
    branches/frame_order_testing/user_functions/pcs.py
    branches/frame_order_testing/user_functions/sequence.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: branches/frame_order_testing/data/__init__.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/data/__init__.py?rev=18207&r1=18206&r2=18207&view=diff

Modified: branches/frame_order_testing/generic_fns/paramag.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/paramag.py?rev=18207&r1=18206&r2=18207&view=diff

Modified: branches/frame_order_testing/generic_fns/pcs.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/pcs.py?rev=18207&r1=18206&r2=18207&view=diff

Modified: branches/frame_order_testing/generic_fns/sequence.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/sequence.py?rev=18207&r1=18206&r2=18207&view=diff

Modified: branches/frame_order_testing/test_suite/system_tests/pcs.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/system_tests/pcs.py?rev=18207&r1=18206&r2=18207&view=diff

Modified: branches/frame_order_testing/test_suite/system_tests/state.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/system_tests/state.py?rev=18207&r1=18206&r2=18207&view=diff

Modified: branches/frame_order_testing/user_functions/pcs.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/user_functions/pcs.py?rev=18207&r1=18206&r2=18207&view=diff

Modified: branches/frame_order_testing/user_functions/sequence.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/user_functions/sequence.py?rev=18207&r1=18206&r2=18207&view=diff