r18221 - in /branches/frame_order_testing: ./ generic_fns/ specific_fns/ test_suite/shared_data/saved_states/ test_suite/sys... -- January 18, 2013 - 12:51

Author: bugman
Date: Fri Jan 18 12:51:01 2013
New Revision: 18221

URL: http://svn.gna.org/viewcvs/relax?rev=18221&view=rev
Log:
Merged revisions 18209-18220 via svnmerge from 
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/trunk

........
  r18209 | bugman | 2013-01-17 18:39:56 +0100 (Thu, 17 Jan 2013) | 6 lines
  
  The N-state model grid search optimises each tensor separately when only 
tensors are optimised.
  
  This massively collapses the grid search size from inc**(5*N) to N*inc**5, 
where inc are the number
  of increments per dimension and N is the number of alignments, making a 
grid search possible.
........
  r18210 | bugman | 2013-01-18 10:42:26 +0100 (Fri, 18 Jan 2013) | 5 lines
  
  Created the N_state_model.test_mc_sim_failure system test to demonstrate a 
bug in the N-state model.
  
  This appears to be a problem with Monte Carlo simulations when data is 
missing.
........
  r18211 | bugman | 2013-01-18 10:46:36 +0100 (Fri, 18 Jan 2013) | 6 lines
  
  Fix for the bug caught by the N_state_model.test_mc_sim_failure system test.
  
  If no RDC error is present, then the returned error from the N-state model 
analysis specific method
  return_error() is None.
........
  r18212 | bugman | 2013-01-18 11:05:38 +0100 (Fri, 18 Jan 2013) | 5 lines
  
  Modified the N_state_model.test_mc_sim_failure system test to include 
missing PCS data.
  
  This is to catch another bug.
........
  r18213 | bugman | 2013-01-18 11:07:40 +0100 (Fri, 18 Jan 2013) | 5 lines
  
  Fix for the missing PCS data in the N-state model Monte Carlo simulations.
  
  This was caught by the N_state_model.test_mc_sim_failure system test.
........
  r18214 | bugman | 2013-01-18 11:41:50 +0100 (Fri, 18 Jan 2013) | 5 lines
  
  Modified the missing data system test script to include Monte Carlo 
simulations.
  
  This is to cover untested code paths.
........
  r18215 | bugman | 2013-01-18 11:51:40 +0100 (Fri, 18 Jan 2013) | 5 lines
  
  Added calls to rdc.set_errors and pcs.set_errors in the missing data 
N-state model system test script.
  
  These user functions currently do not exist, but are needed as the data 
files contain no errors.
........
  r18216 | bugman | 2013-01-18 12:14:17 +0100 (Fri, 18 Jan 2013) | 3 lines
  
  Implemented the rdc.set_errors user function.
........
  r18217 | bugman | 2013-01-18 12:21:25 +0100 (Fri, 18 Jan 2013) | 3 lines
  
  Implemented the pcs.set_error user function.
........
  r18218 | bugman | 2013-01-18 12:23:34 +0100 (Fri, 18 Jan 2013) | 3 lines
  
  Removed a debugging commenting out in the pcs.set_errors user function 
definition.
........
  r18219 | bugman | 2013-01-18 12:43:24 +0100 (Fri, 18 Jan 2013) | 3 lines
  
  Fix for the N_state_model.test_mc_sim_failure GUI test - the relax data 
store was not empty at the start.
........
  r18220 | bugman | 2013-01-18 12:46:24 +0100 (Fri, 18 Jan 2013) | 7 lines
  
  Modified all generic_fns.mol_res_spin.get_*() functions to handle no data 
pipes being present.
  
  These functions were previously raising RelaxErrors as no pipes were 
present.  They now return empty
  lists instead.  This allows many of the GUI user functions to open in the 
GUI when no data is
  present, allowing better debugging and less confusion for the user.
........

Added:
    
branches/frame_order_testing/test_suite/shared_data/saved_states/n_state_model_mc_fail.bz2
      - copied unchanged from r18220, 
trunk/test_suite/shared_data/saved_states/n_state_model_mc_fail.bz2
Modified:
    branches/frame_order_testing/   (props changed)
    branches/frame_order_testing/generic_fns/mol_res_spin.py
    branches/frame_order_testing/generic_fns/pcs.py
    branches/frame_order_testing/generic_fns/rdc.py
    branches/frame_order_testing/specific_fns/n_state_model.py
    branches/frame_order_testing/test_suite/system_tests/n_state_model.py
    
branches/frame_order_testing/test_suite/system_tests/scripts/n_state_model/missing_data_test.py
    branches/frame_order_testing/user_functions/pcs.py
    branches/frame_order_testing/user_functions/rdc.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: branches/frame_order_testing/generic_fns/mol_res_spin.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/mol_res_spin.py?rev=18221&r1=18220&r2=18221&view=diff

Modified: branches/frame_order_testing/generic_fns/pcs.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/pcs.py?rev=18221&r1=18220&r2=18221&view=diff

Modified: branches/frame_order_testing/generic_fns/rdc.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/rdc.py?rev=18221&r1=18220&r2=18221&view=diff

Modified: branches/frame_order_testing/specific_fns/n_state_model.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/specific_fns/n_state_model.py?rev=18221&r1=18220&r2=18221&view=diff

Modified: 
branches/frame_order_testing/test_suite/system_tests/n_state_model.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/system_tests/n_state_model.py?rev=18221&r1=18220&r2=18221&view=diff

Modified: 
branches/frame_order_testing/test_suite/system_tests/scripts/n_state_model/missing_data_test.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/system_tests/scripts/n_state_model/missing_data_test.py?rev=18221&r1=18220&r2=18221&view=diff

Modified: branches/frame_order_testing/user_functions/pcs.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/user_functions/pcs.py?rev=18221&r1=18220&r2=18221&view=diff

Modified: branches/frame_order_testing/user_functions/rdc.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/user_functions/rdc.py?rev=18221&r1=18220&r2=18221&view=diff