Author: bugman
Date: Sun Jan 27 21:18:54 2013
New Revision: 18317
URL: http://svn.gna.org/viewcvs/relax?rev=18317&view=rev
Log:
Updated the HTML version of the user manual at
http://www.nmr-relax.com/manual/ to version 2.2.0.
Added:
website/manual/interatomic_copy.html
website/manual/interatomic_create.html
website/manual/pcs_copy.html
website/manual/pcs_set_errors.html
website/manual/pcs_structural_noise.html
website/manual/pipe_change_type.html
website/manual/rdc_copy.html
website/manual/rdc_set_errors.html
Modified:
website/manual/Abbreviations.html
website/manual/About_this_document.html
website/manual/Access_internals_relax.html
website/manual/All_model_free_models_script_mode_explanation.html
website/manual/All_model_free_models_script_mode_sample_script.html
website/manual/Alphabetical_listing_user_functions.html
website/manual/Assigning_issue_yourself.html
website/manual/Becoming_committer.html
website/manual/Bibliography.html
website/manual/Branch_creation.html
website/manual/Branches.html
website/manual/Brownian_rotational_diffusion.html
website/manual/C_module_compilation.html
website/manual/Calculating_NOE.html
website/manual/Calculation_NOE_in_prompt_script_UI_mode.html
website/manual/Citations.html
website/manual/Cleaning_up.html
website/manual/Closing_issue.html
website/manual/Coding_conventions.html
website/manual/Comments.html
website/manual/Committers.html
website/manual/Compilation_API_documentation_HTML_version.html
website/manual/Compilation_user_manual_HTML_version.html
website/manual/Compilation_user_manual_PDF_version.html
website/manual/Components_Ri_prime_theta_equations.html
website/manual/Consistency_testing.html
website/manual/Consistency_testing_analysis_references.html
website/manual/Consistency_testing_in_prompt_script_UI_mode.html
website/manual/Consistency_testing_script_mode_calculation_error_.html
website/manual/Consistency_testing_script_mode_data_pipe_spin.html
website/manual/Consistency_testing_script_mode_relaxation_data_lo.html
website/manual/Consistency_testing_script_mode_relaxation_interac.html
website/manual/Consistency_testing_script_mode_sample_script.html
website/manual/Consistency_testing_script_mode_visualisation_data.html
website/manual/Construction_Hessian.html
website/manual/Construction_gradient.html
website/manual/Construction_values_gradients_Hessians.html
website/manual/Contents.html
website/manual/Copying_modification_sublicencing_distribution_rel.html
website/manual/Dasha.html
website/manual/Data_analysis_tools.html
website/manual/Data_visualisation.html
website/manual/Defaults.html
website/manual/Dependencies.html
website/manual/Discussing_major_changes.html
website/manual/Doc_strings.html
website/manual/Docstring_sectioning.html
website/manual/Ellipsoidal_diffusion_tensor.html
website/manual/Ellipsoidal_dot_product_derivatives.html
website/manual/Final_checks_curve_fitting.html
website/manual/Format_commit_logs.html
website/manual/From_spectra_peak_intensities_NOE.html
website/manual/From_spectra_peak_intensities_relaxation_rates.html
website/manual/Further_details.html
website/manual/GPL.html
website/manual/GUI.html
website/manual/GUI_mode_deselect_spins.html
website/manual/GUI_mode_manual_construction.html
website/manual/GUI_mode_setting_up_data_pipe.html
website/manual/GUI_mode_spins_from_sequence_file.html
website/manual/GUI_mode_spins_from_structural_data.html
website/manual/Generic_parts_relax.html
website/manual/Grace.html
website/manual/Graphical_user_interface_reference.html
website/manual/Hessian.html
website/manual/How_use_relax.html
website/manual/Indentation.html
website/manual/Index.html
website/manual/Installation.html
website/manual/Installation_instructions.html
website/manual/Installation_on_GNU_Linux.html
website/manual/Installation_on_MS_Windows.html
website/manual/Installation_on_Mac_OS_X.html
website/manual/Installation_on_your_OS.html
website/manual/Interatomic_data_containers.html
website/manual/Interfacing_with_other_programs.html
website/manual/Introduction.html
website/manual/Introduction_consistency_testing_relaxation_data.html
website/manual/Introduction_mathematics_behind_optimisation_relax.html
website/manual/Introduction_multi_processor.html
website/manual/Introduction_reduced_spectral_density_mapping.html
website/manual/Introduction_relaxation_curve_fitting.html
website/manual/Introduction_steady_state_NOE.html
website/manual/J_w_mapping_script_mode_calculation_error_propagat.html
website/manual/J_w_mapping_script_mode_data_pipe_spin.html
website/manual/J_w_mapping_script_mode_relaxation_data_loading.html
website/manual/J_w_mapping_script_mode_relaxation_interactions.html
website/manual/J_w_mapping_script_mode_sample_script.html
website/manual/J_w_mapping_script_mode_visualisation_data_output.html
website/manual/Joining_Gna.html
website/manual/Joining_relax_project.html
website/manual/Keeping_branch_up_date_using_svnmerge_py.html
website/manual/Latest_sources_relax_repositories.html
website/manual/Licence.html
website/manual/Links_links_more_links.html
website/manual/List_Figures.html
website/manual/List_Tables.html
website/manual/Literature.html
website/manual/Making_distribution_archives.html
website/manual/Measuring_peak_intensities.html
website/manual/Merging_branch_back_into_main_line.html
website/manual/Minimisation_concepts.html
website/manual/Model_free_analysis.html
website/manual/Model_free_analysis_in_reverse.html
website/manual/Model_free_analysis_references.html
website/manual/Model_free_model_selection.html
website/manual/Model_free_model_selection_script_mode_explanation.html
website/manual/Model_free_model_selection_script_mode_sample_scri.html
website/manual/Model_free_optimisation_theory.html
website/manual/Model_free_theory.html
website/manual/Model_selection_references.html
website/manual/Modelfree4.html
website/manual/Modification_latest_sources_creating_patches_with_.html
website/manual/Modification_official_releases_creating_patches_wi.html
website/manual/Molecule_residue_spin_containers.html
website/manual/Molmol.html
website/manual/NOE_GUI_mode_NOE_calculation.html
website/manual/NOE_GUI_mode_general_setup.html
website/manual/NOE_GUI_mode_initialisation_data_pipe.html
website/manual/NOE_GUI_mode_loading_data.html
website/manual/NOE_GUI_mode_setting_up_spin_systems.html
website/manual/NOE_GUI_mode_unresolved_spins.html
website/manual/NOE_auto_analysis_in_GUI.html
website/manual/NOE_script_mode_NOE_calculation.html
website/manual/NOE_script_mode_initialisation_data_pipe.html
website/manual/NOE_script_mode_loading_data.html
website/manual/NOE_script_mode_sample_script.html
website/manual/NOE_script_mode_setting_errors.html
website/manual/NOE_script_mode_setting_up_spin_systems.html
website/manual/NOE_script_mode_unresolved_spins.html
website/manual/NOE_script_mode_viewing_results.html
website/manual/N_state_model_analysis_references.html
website/manual/Navigation.html
website/manual/News.html
website/manual/OpenDX.html
website/manual/Open_source_infrastructure.html
website/manual/Optimisation_all_model_free_models.html
website/manual/Optimisation_diffusion_tensor_parameters.html
website/manual/Optimisation_global_model.html
website/manual/Optimisation_local_taum_models.html
website/manual/Optimisation_model_free_models.html
website/manual/Optimisation_relaxation_data_values_gradients_Hess.html
website/manual/Optimisation_single_model_free_model.html
website/manual/Optional_programs.html
website/manual/Other_citations.html
website/manual/Private_vs_public_messages.html
website/manual/Program_features.html
website/manual/PyMOL.html
website/manual/Python.html
website/manual/Reduced_spectral_density_mapping.html
website/manual/Reduced_spectral_density_mapping_references.html
website/manual/Relax_fit_GUI_mode_general_setup.html
website/manual/Relax_fit_GUI_mode_initialisation_data_pipe.html
website/manual/Relax_fit_GUI_mode_loading_data.html
website/manual/Relax_fit_GUI_mode_optimisation_error_analysis.html
website/manual/Relax_fit_GUI_mode_setting_up_spin_systems.html
website/manual/Relax_fit_GUI_mode_unresolved_spins.html
website/manual/Relax_fit_script_mode_error_analysis.html
website/manual/Relax_fit_script_mode_finishing_off.html
website/manual/Relax_fit_script_mode_initialisation_data_pipe.html
website/manual/Relax_fit_script_mode_loading_data.html
website/manual/Relax_fit_script_mode_optimisation_exponential_cur.html
website/manual/Relax_fit_script_mode_rest_setup.html
website/manual/Relax_fit_script_mode_sample_script.html
website/manual/Relax_fit_script_mode_setting_up_spin_systems.html
website/manual/Relaxation_curve_fitting.html
website/manual/Relaxation_curve_fitting_in_prompt_script_UI_mode.html
website/manual/Replying_message.html
website/manual/Reporting_bugs.html
website/manual/Ri_prime_theta_Hessians.html
website/manual/Ri_prime_theta_gradients.html
website/manual/Ri_prime_theta_values.html
website/manual/Ri_prime_theta_values_gradients_Hessians.html
website/manual/Ri_theta_Hessians.html
website/manual/Ri_theta_gradients.html
website/manual/Ri_theta_values.html
website/manual/Ri_theta_values_gradients_Hessians.html
website/manual/Running_non_compiled_version.html
website/manual/SCons_build_system.html
website/manual/SCons_help.html
website/manual/Script_mode_manual_construction.html
website/manual/Script_mode_spins_from_sequence_file.html
website/manual/Script_mode_spins_from_structural_data.html
website/manual/Scripting.html
website/manual/Search_engine_indexing.html
website/manual/Setup_in_GUI.html
website/manual/Setup_in_prompt_script_UI.html
website/manual/Single_model_free_model_script_mode_explanation.html
website/manual/Single_model_free_model_script_mode_sample_script.html
website/manual/Specific_analyses.html
website/manual/Spectral_processing.html
website/manual/Spherical_diffusion_tensor.html
website/manual/Spheroidal_diffusion_tensor.html
website/manual/Spheroidal_dot_product_derivatives.html
website/manual/Submitting_bug_report.html
website/manual/Submitting_changes_as_patch.html
website/manual/Submitting_changes_relax_project.html
website/manual/Supported_NMR_theories.html
website/manual/Tab_completion.html
website/manual/Temperature_control_calibration.html
website/manual/Usage_multi_processor.html
website/manual/Usage_name_relax.html
website/manual/User_functions.html
website/manual/Variable_function_class_names.html
website/manual/Version_control_using_Subversion.html
website/manual/Whitespace.html
website/manual/align_tensor_copy.html
website/manual/align_tensor_delete.html
website/manual/align_tensor_display.html
website/manual/align_tensor_fix.html
website/manual/align_tensor_init.html
website/manual/align_tensor_matrix_angles.html
website/manual/align_tensor_reduction.html
website/manual/align_tensor_set_domain.html
website/manual/align_tensor_svd.html
website/manual/angles_diff_frame.html
website/manual/bmrb_citation.html
website/manual/bmrb_display.html
website/manual/bmrb_read.html
website/manual/bmrb_script.html
website/manual/bmrb_software.html
website/manual/bmrb_software_select.html
website/manual/bmrb_thiol_state.html
website/manual/bmrb_write.html
website/manual/bruker_read.html
website/manual/bug_task_support_request_trackers.html
website/manual/calc.html
website/manual/chi_squared_Hessian.html
website/manual/chi_squared_function_chi2_theta.html
website/manual/chi_squared_gradient.html
website/manual/chi_squared_value.html
website/manual/chi_squared_value_gradient_Hessian.html
website/manual/concept_relax_data_model.html
website/manual/consistency_tests_set_frq.html
website/manual/core_design_relax.html
website/manual/correlation_time_Hessian_sphere.html
website/manual/correlation_time_Hessians_ellipsoid.html
website/manual/correlation_time_Hessians_spheroid.html
website/manual/correlation_time_gradient_sphere.html
website/manual/correlation_time_gradients_ellipsoid.html
website/manual/correlation_time_gradients_spheroid.html
website/manual/correlation_time_sphere.html
website/manual/correlation_times_ellipsoid.html
website/manual/correlation_times_spheroid.html
website/manual/d_Auvergne_protocol_GUI_mode_BMRB_deposition.html
website/manual/d_Auvergne_protocol_GUI_mode_completion.html
website/manual/d_Auvergne_protocol_GUI_mode_data_pipe_initialisat.html
website/manual/d_Auvergne_protocol_GUI_mode_execution.html
website/manual/d_Auvergne_protocol_GUI_mode_general_setup.html
website/manual/d_Auvergne_protocol_GUI_mode_loading_data.html
website/manual/d_Auvergne_protocol_GUI_mode_relaxation_interactio.html
website/manual/d_Auvergne_protocol_GUI_mode_rest_setup.html
website/manual/d_Auvergne_protocol_GUI_mode_setting_up_spin.html
website/manual/d_Auvergne_protocol_GUI_mode_spin_isotopes.html
website/manual/d_Auvergne_protocol_GUI_mode_unresolved_spins.html
website/manual/d_Auvergne_protocol_script_mode_analysis_variables.html
website/manual/d_Auvergne_protocol_script_mode_data_pipe_initiali.html
website/manual/d_Auvergne_protocol_script_mode_deselection.html
website/manual/d_Auvergne_protocol_script_mode_execution.html
website/manual/d_Auvergne_protocol_script_mode_loading_data.html
website/manual/d_Auvergne_protocol_script_mode_relaxation_interac.html
website/manual/d_Auvergne_protocol_script_mode_sample_script.html
website/manual/d_Auvergne_protocol_script_mode_setting_up_spin.html
website/manual/dasha_create.html
website/manual/dasha_execute.html
website/manual/dasha_extract.html
website/manual/data_model.html
website/manual/data_pipe.html
website/manual/deselect_all.html
website/manual/deselect_interatom.html
website/manual/deselect_read.html
website/manual/deselect_reverse.html
website/manual/deselect_spin.html
website/manual/diffusion_equation_ellipsoid.html
website/manual/diffusion_equation_sphere.html
website/manual/diffusion_equation_spheroid.html
website/manual/diffusion_seeded_paradigm.html
website/manual/diffusion_tensor_copy.html
website/manual/diffusion_tensor_delete.html
website/manual/diffusion_tensor_display.html
website/manual/diffusion_tensor_init.html
website/manual/dipole_pair_define.html
website/manual/dipole_pair_read_dist.html
website/manual/dipole_pair_set_dist.html
website/manual/dipole_pair_unit_vectors.html
website/manual/divisions_relax_s_source_code.html
website/manual/dot_product_Hessian_ellipsoid.html
website/manual/dot_product_Hessian_spheroid.html
website/manual/dot_product_ellipsoid.html
website/manual/dot_product_gradient_ellipsoid.html
website/manual/dot_product_gradient_spheroid.html
website/manual/dot_product_spheroid.html
website/manual/dx_execute.html
website/manual/dx_map.html
website/manual/eliminate.html
website/manual/extended_model_free_Hessian.html
website/manual/extended_model_free_gradient.html
website/manual/fix.html
website/manual/four_parameter_combinations.html
website/manual/frame_order_cone_pdb.html
website/manual/frame_order_domain_to_pdb.html
website/manual/frame_order_pivot.html
website/manual/frame_order_ref_domain.html
website/manual/frame_order_select_model.html
website/manual/frq_set.html
website/manual/function_value.html
website/manual/grace_view.html
website/manual/grace_write.html
website/manual/gradient.html
website/manual/grid_search.html
website/manual/help_system.html
website/manual/images.log
website/manual/images.pl
website/manual/images.tex
website/manual/index.html
website/manual/internals.pl
website/manual/jw_mapping_set_frq.html
website/manual/labels.pl
website/manual/list_functions.html
website/manual/mailing_lists.html
website/manual/mailing_lists_development.html
website/manual/major_components_relax.html
website/manual/methodology_Mandel_et_al_1995.html
website/manual/minimise.html
website/manual/model_free_create_model.html
website/manual/model_free_delete.html
website/manual/model_free_equations.html
website/manual/model_free_models.html
website/manual/model_free_remove_tm.html
website/manual/model_free_select_model.html
website/manual/model_selection.html
website/manual/molecule_copy.html
website/manual/molecule_create.html
website/manual/molecule_delete.html
website/manual/molecule_display.html
website/manual/molecule_name.html
website/manual/molecule_type.html
website/manual/molmol_clear_history.html
website/manual/molmol_command.html
website/manual/molmol_macro_apply.html
website/manual/molmol_macro_run.html
website/manual/molmol_macro_write.html
website/manual/molmol_ribbon.html
website/manual/molmol_tensor_pdb.html
website/manual/molmol_view.html
website/manual/monte_carlo_create_data.html
website/manual/monte_carlo_error_analysis.html
website/manual/monte_carlo_initial_values.html
website/manual/monte_carlo_off.html
website/manual/monte_carlo_on.html
website/manual/monte_carlo_setup.html
website/manual/multi_processor_framework.html
website/manual/multi_processor_reference.html
website/manual/n_state_model_CoM.html
website/manual/n_state_model_cone_pdb.html
website/manual/n_state_model_elim_no_prob.html
website/manual/n_state_model_number_of_states.html
website/manual/n_state_model_ref_domain.html
website/manual/n_state_model_select_model.html
website/manual/new_model_free_optimisation_protocol.html
website/manual/new_protocol_diffusion_tensor.html
website/manual/new_protocol_in_GUI.html
website/manual/new_protocol_in_prompt_script_UI_mode.html
website/manual/new_protocol_model_free_models.html
website/manual/next_steps.html
website/manual/noe_read_restraints.html
website/manual/noe_spectrum_type.html
website/manual/original_model_free_Hessian.html
website/manual/original_model_free_gradient.html
website/manual/palmer_create.html
website/manual/palmer_execute.html
website/manual/palmer_extract.html
website/manual/paramag_centre.html
website/manual/pcs_back_calc.html
website/manual/pcs_calc_q_factors.html
website/manual/pcs_corr_plot.html
website/manual/pcs_delete.html
website/manual/pcs_display.html
website/manual/pcs_read.html
website/manual/pcs_weight.html
website/manual/pcs_write.html
website/manual/pipe_bundle.html
website/manual/pipe_copy.html
website/manual/pipe_create.html
website/manual/pipe_current.html
website/manual/pipe_delete.html
website/manual/pipe_display.html
website/manual/pipe_hybridise.html
website/manual/pipe_switch.html
website/manual/prompt.html
website/manual/pymol_cartoon.html
website/manual/pymol_clear_history.html
website/manual/pymol_command.html
website/manual/pymol_cone_pdb.html
website/manual/pymol_macro_apply.html
website/manual/pymol_macro_run.html
[... 1699 lines stripped ...]
r18317 - /website/manual/