r18328 - in /trunk/test_suite: shared_data/saved_states/ system_tests/ system_tests/scripts/model_free/ -- February 01, 2013 - 11:19

Author: bugman
Date: Fri Feb  1 11:19:09 2013
New Revision: 18328

URL: http://svn.gna.org/viewcvs/relax?rev=18328&view=rev
Log:
Created the Mf.test_bug_20464_missing_ri_data system test to catch bug #20464.

The data comes from the bug report submitted by Stanislava Panova (stpanova 
att gmail dot com) at
https://gna.org/bugs/?20464.


Added:
    
trunk/test_suite/shared_data/saved_states/bug_20464_mf_missing_ri_data.bz2   
(with props)
    
trunk/test_suite/system_tests/scripts/model_free/bug_20464_missing_ri_data.py
Modified:
    trunk/test_suite/system_tests/model_free.py

Added: 
trunk/test_suite/shared_data/saved_states/bug_20464_mf_missing_ri_data.bz2
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/saved_states/bug_20464_mf_missing_ri_data.bz2?rev=18328&view=auto
==============================================================================
Binary file - no diff available.

Propchange: 
trunk/test_suite/shared_data/saved_states/bug_20464_mf_missing_ri_data.bz2
------------------------------------------------------------------------------
    svn:mime-type = application/octet-stream

Modified: trunk/test_suite/system_tests/model_free.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/model_free.py?rev=18328&r1=18327&r2=18328&view=diff
==============================================================================
--- trunk/test_suite/system_tests/model_free.py (original)
+++ trunk/test_suite/system_tests/model_free.py Fri Feb  1 11:19:09 2013
@@ -1,6 +1,6 @@
 
###############################################################################
 #                                                                            
 #
-# Copyright (C) 2006-2012 Edward d'Auvergne                                  
 #
+# Copyright (C) 2006-2013 Edward d'Auvergne                                  
 #
 #                                                                            
 #
 # This file is part of the program relax (http://www.nmr-relax.com).         
 #
 #                                                                            
 #
@@ -281,6 +281,16 @@
 
         # Execute the script.
         self.script_exec(status.install_path + 
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'model_free'+sep+'bug_20213_asn_sidechain.py')
+
+
+    def test_bug_20464_missing_ri_data(self):
+        """Bug #20464 catch (https://gna.org/bugs/?20464), the failure due 
to missing relaxation data."""
+
+        # Clear the data store.
+        self.interpreter.reset()
+
+        # Execute the script.
+        self.script_exec(status.install_path + 
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'model_free'+sep+'bug_20464_missing_ri_data.py')
 
 
     def test_create_m4(self):

Added: 
trunk/test_suite/system_tests/scripts/model_free/bug_20464_missing_ri_data.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/model_free/bug_20464_missing_ri_data.py?rev=18328&view=auto
==============================================================================
--- 
trunk/test_suite/system_tests/scripts/model_free/bug_20464_missing_ri_data.py 
(added)
+++ 
trunk/test_suite/system_tests/scripts/model_free/bug_20464_missing_ri_data.py 
Fri Feb  1 11:19:09 2013
@@ -1,0 +1,39 @@
+# Script for catching bug #20464, the failure due to missing relaxation data 
(https://gna.org/bugs/?20464).
+
+
+# Python module imports.
+from os import sep
+
+# relax module imports.
+from auto_analyses.dauvergne_protocol import dAuvergne_protocol
+from status import Status; status = Status()
+
+
+# The diffusion model.
+DIFF_MODEL = 'local_tm'
+
+# The model-free models.  Do not change these unless absolutely necessary, 
the protocol is likely to fail if these are changed.
+MF_MODELS = ['m0', 'm1', 'm2', 'm3', 'm4', 'm5', 'm6', 'm7', 'm8', 'm9']
+LOCAL_TM_MODELS = ['tm0', 'tm1', 'tm2', 'tm3', 'tm4', 'tm5', 'tm6', 'tm7', 
'tm8', 'tm9']
+
+# The grid search size (the number of increments per dimension).
+GRID_INC = 11
+
+# The optimisation technique.
+MIN_ALGOR = 'newton'
+
+# The number of Monte Carlo simulations to be used for error analysis at the 
end of the analysis.
+MC_NUM = 500
+
+# Automatic looping over all rounds until convergence (must be a boolean 
value of True or False).
+CONV_LOOP = True
+
+
+# The data path.
+data_path = status.install_path + sep + 'test_suite' + sep + 'shared_data' + 
sep + 'saved_states'
+
+# Load the state.
+state.load('bug_20464_mf_missing_ri_data', dir=data_path)
+
+# Do not change!
+dAuvergne_protocol(pipe_name='origin - mf (Thu Jan 31 10:06:25 2013)', 
pipe_bundle='mf (Thu Jan 31 10:06:25 2013)', diff_model=DIFF_MODEL, 
mf_models=MF_MODELS, local_tm_models=LOCAL_TM_MODELS, grid_inc=GRID_INC, 
min_algor=MIN_ALGOR, mc_sim_num=MC_NUM, conv_loop=CONV_LOOP)