Author: bugman
Date: Fri Feb 1 11:43:26 2013
New Revision: 18335
URL: http://svn.gna.org/viewcvs/relax?rev=18335&view=rev
Log:
Created the Structure.test_bug_sr_2998_broken_conect_records system test.
This is to catch the bug reported as service request #2998
(https://gna.org/support/?2998) and is
for corrupted PDB files with broken CONECT records.
Added:
trunk/test_suite/shared_data/structures/1RTE_trunc.pdb
Modified:
trunk/test_suite/system_tests/structure.py
Added: trunk/test_suite/shared_data/structures/1RTE_trunc.pdb
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/1RTE_trunc.pdb?rev=18335&view=auto
==============================================================================
--- trunk/test_suite/shared_data/structures/1RTE_trunc.pdb (added)
+++ trunk/test_suite/shared_data/structures/1RTE_trunc.pdb Fri Feb 1
11:43:26 2013
@@ -1,0 +1,13 @@
+ATOM 5 N LEU A 3 49.617 4.693 46.426 1.00 24.00
N
+ATOM 6 CA LEU A 3 49.432 5.476 45.190 1.00 23.29
C
+ATOM 7 C LEU A 3 50.346 4.980 44.055 1.00 22.59
C
+ATOM 8 O LEU A 3 49.924 4.868 42.889 1.00 21.23
O
+ATOM 9 CB LEU A 3 49.673 6.968 45.457 1.00 23.01
C
+ATOM 10 CG LEU A 3 49.804 7.863 44.222 1.00 22.69
C
+ATOM 11 CD1 LEU A 3 48.564 7.837 43.327 1.00 21.71
C
+ATOM 12 CD2 LEU A 3 50.075 9.282 44.625 1.00 24.53
C
+TER 13 LEU A 3
+HETATM 1993 C CYN A 445 29.160 13.127 62.533 1.00 19.42
C
+CONECT 666 2020
+CONECT 1655 2080
+END
Modified: trunk/test_suite/system_tests/structure.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/structure.py?rev=18335&r1=18334&r2=18335&view=diff
==============================================================================
--- trunk/test_suite/system_tests/structure.py (original)
+++ trunk/test_suite/system_tests/structure.py Fri Feb 1 11:43:26 2013
@@ -53,6 +53,16 @@
self.interpreter.pipe.create('mf', 'mf')
+ def test_bug_sr_2998_broken_conect_records(self):
+ """Test the bug reported as the support request #2998
(https://gna.org/support/?2998), the broken CONECT records."""
+
+ # Path of the structure file.
+ path = status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'structures'
+
+ # Load the file.
+ self.interpreter.structure.read_pdb('1RTE_trunc.pdb', dir=path)
+
+
def test_displacement(self):
"""Test of the structure.displacement user function."""
r18335 - in /trunk/test_suite: shared_data/structures/1RTE_trunc.pdb system_tests/structure.py