r18338 - /trunk/generic_fns/structure/internal.py -- February 01, 2013 - 11:48

Author: bugman
Date: Fri Feb  1 11:48:46 2013
New Revision: 18338

URL: http://svn.gna.org/viewcvs/relax?rev=18338&view=rev
Log:
Fix for the bug reported as the support request #2998 
(https://gna.org/support/?2998).

CONECT records pointing to non-existent atoms can now be handled.


Modified:
    trunk/generic_fns/structure/internal.py

Modified: trunk/generic_fns/structure/internal.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/generic_fns/structure/internal.py?rev=18338&r1=18337&r2=18338&view=diff
==============================================================================
--- trunk/generic_fns/structure/internal.py (original)
+++ trunk/generic_fns/structure/internal.py Fri Feb  1 11:48:46 2013
@@ -1,6 +1,6 @@
 
###############################################################################
 #                                                                            
 #
-# Copyright (C) 2003-2012 Edward d'Auvergne                                  
 #
+# Copyright (C) 2003-2013 Edward d'Auvergne                                  
 #
 #                                                                            
 #
 # This file is part of the program relax (http://www.nmr-relax.com).         
 #
 #                                                                            
 #
@@ -2117,6 +2117,10 @@
                     if record[i+2] == None:
                         continue
 
+                    # Skip broken CONECT records (for when the record points 
to a non-existent atom).
+                    if self._atom_index(record[1]) == None or 
self._atom_index(record[i+2]) == None:
+                        continue
+
                     # Make the connection.
                     self.atom_connect(index1=self._atom_index(record[1]), 
index2=self._atom_index(record[i+2]))