r18354 - in /branches/frame_order_testing: ./ generic_fns/structure/ test_suite/system_tests/ user_functions/ -- February 01, 2013 - 15:55

Author: bugman
Date: Fri Feb  1 15:55:03 2013
New Revision: 18354

URL: http://svn.gna.org/viewcvs/relax?rev=18354&view=rev
Log:
Merged revisions 18350-18352 via svnmerge from 
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/trunk

........
  r18350 | bugman | 2013-02-01 15:23:45 +0100 (Fri, 01 Feb 2013) | 6 lines
  
  Created the Structure.test_alt_loc_missing system test.
  
  This is to test that the internal relax PDB reader raises an error when a 
PDB file is encountered
  with alternate location indicators but the alt_loc argument has not been 
specified.
........
  r18351 | bugman | 2013-02-01 15:27:36 +0100 (Fri, 01 Feb 2013) | 7 lines
  
  Fix for bug #20470 (https://gna.org/bugs/?20470).
  
  The structure.read_pdb user function now accepts the alt_loc argument for 
specifying the alternate
  location indicator to read.  This is used by the internal PDB reader.  The 
bug was caught by the
  Structure.test_bug_20470_alternate_location_indicator system test.
........
  r18352 | bugman | 2013-02-01 15:37:30 +0100 (Fri, 01 Feb 2013) | 5 lines
  
  Fix for the checking of the alternate location indicator in the internal 
PDB reader.
  
  These checks now only occur for the ATOM and HETATM records.
........

Modified:
    branches/frame_order_testing/   (props changed)
    branches/frame_order_testing/generic_fns/structure/api_base.py
    branches/frame_order_testing/generic_fns/structure/internal.py
    branches/frame_order_testing/generic_fns/structure/main.py
    branches/frame_order_testing/generic_fns/structure/scientific.py
    branches/frame_order_testing/test_suite/system_tests/structure.py
    branches/frame_order_testing/user_functions/structure.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: branches/frame_order_testing/generic_fns/structure/api_base.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/structure/api_base.py?rev=18354&r1=18353&r2=18354&view=diff

Modified: branches/frame_order_testing/generic_fns/structure/internal.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/structure/internal.py?rev=18354&r1=18353&r2=18354&view=diff

Modified: branches/frame_order_testing/generic_fns/structure/main.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/structure/main.py?rev=18354&r1=18353&r2=18354&view=diff

Modified: branches/frame_order_testing/generic_fns/structure/scientific.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/generic_fns/structure/scientific.py?rev=18354&r1=18353&r2=18354&view=diff

Modified: branches/frame_order_testing/test_suite/system_tests/structure.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/test_suite/system_tests/structure.py?rev=18354&r1=18353&r2=18354&view=diff

Modified: branches/frame_order_testing/user_functions/structure.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_testing/user_functions/structure.py?rev=18354&r1=18353&r2=18354&view=diff