r19124 - in /trunk: data_store/ docs/latex/ extern/ extern/scientific_python/ lib/structure/internal/ pipe_control/structure...r19124 - in /trunk: data_store/ docs/latex/ extern/ extern/scientific_python/ lib/structure/internal/ pipe_control/structure...Author: bugman Date: Sun Mar 24 17:24:44 2013 New Revision: 19124 URL: http://svn.gna.org/viewcvs/relax?rev=19124&view=rev Log: Total elimination of the ScientificPython PDB object. Maintaining this reader was too much effort and the internal structural object has now surpassed the capabilities of the ScientificPython PDB object (for example the internal object is not PDB specific). And ScientificPython is very much a dead project, largely replaced by the more successful scipy. Removed: trunk/extern/scientific_python/ trunk/pipe_control/structure/scientific.py trunk/test_suite/shared_data/structures/generate_str_scientific_results.py trunk/test_suite/shared_data/structures/str_scientific.bz2 trunk/test_suite/unit_tests/_pipe_control/_structure/test_scientific.py Modified: trunk/data_store/pipe_container.py trunk/docs/latex/develop.tex trunk/extern/__init__.py trunk/lib/structure/internal/models.py trunk/lib/structure/internal/molecules.py trunk/pipe_control/structure/__init__.py trunk/pipe_control/structure/api_base.py trunk/pipe_control/structure/internal.py trunk/pipe_control/structure/main.py trunk/test_suite/shared_data/structures/generate_str_internal_results.py trunk/test_suite/system_tests/load_spins.py trunk/test_suite/system_tests/structure.py trunk/test_suite/system_tests/unit_vectors.py trunk/test_suite/unit_tests/_pipe_control/_structure/__init__.py trunk/test_suite/unit_tests/_pipe_control/_structure/test_api_base.py trunk/user_functions/structure.py [This mail would be too long, it was shortened to contain the URLs only.] Modified: trunk/data_store/pipe_container.py URL: http://svn.gna.org/viewcvs/relax/trunk/data_store/pipe_container.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/docs/latex/develop.tex URL: http://svn.gna.org/viewcvs/relax/trunk/docs/latex/develop.tex?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/extern/__init__.py URL: http://svn.gna.org/viewcvs/relax/trunk/extern/__init__.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/lib/structure/internal/models.py URL: http://svn.gna.org/viewcvs/relax/trunk/lib/structure/internal/models.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/lib/structure/internal/molecules.py URL: http://svn.gna.org/viewcvs/relax/trunk/lib/structure/internal/molecules.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/pipe_control/structure/__init__.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/__init__.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/pipe_control/structure/api_base.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/api_base.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/pipe_control/structure/internal.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/internal.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/pipe_control/structure/main.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/main.py?rev=19124&r1=19123&r2=19124&view=diff Removed: trunk/pipe_control/structure/scientific.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/scientific.py?rev=19123&view=auto Modified: trunk/test_suite/shared_data/structures/generate_str_internal_results.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/generate_str_internal_results.py?rev=19124&r1=19123&r2=19124&view=diff Removed: trunk/test_suite/shared_data/structures/generate_str_scientific_results.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/generate_str_scientific_results.py?rev=19123&view=auto Removed: trunk/test_suite/shared_data/structures/str_scientific.bz2 URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/str_scientific.bz2?rev=19123&view=auto Modified: trunk/test_suite/system_tests/load_spins.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/load_spins.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/test_suite/system_tests/structure.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/structure.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/test_suite/system_tests/unit_vectors.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/unit_vectors.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/test_suite/unit_tests/_pipe_control/_structure/__init__.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_pipe_control/_structure/__init__.py?rev=19124&r1=19123&r2=19124&view=diff Modified: trunk/test_suite/unit_tests/_pipe_control/_structure/test_api_base.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_pipe_control/_structure/test_api_base.py?rev=19124&r1=19123&r2=19124&view=diff Removed: trunk/test_suite/unit_tests/_pipe_control/_structure/test_scientific.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_pipe_control/_structure/test_scientific.py?rev=19123&view=auto Modified: trunk/user_functions/structure.py URL: http://svn.gna.org/viewcvs/relax/trunk/user_functions/structure.py?rev=19124&r1=19123&r2=19124&view=diff