Author: bugman
Date: Sun Jun 16 22:05:55 2013
New Revision: 20165
URL: http://svn.gna.org/viewcvs/relax?rev=20165&view=rev
Log:
Merged revisions 20150-20164 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/trunk
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r20150 | bugman | 2013-06-16 15:23:18 +0200 (Sun, 16 Jun 2013) | 3 lines
More cleanups of unused imports throughout relax.
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r20151 | bugman | 2013-06-16 16:49:03 +0200 (Sun, 16 Jun 2013) | 3 lines
Fixes and expansion of the test_suite.unit_tests._lib package __all__ list.
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r20152 | bugman | 2013-06-16 17:23:11 +0200 (Sun, 16 Jun 2013) | 6 lines
Fixes and improvements to Gary Thompson's unit_test_runner.py script.
The printouts have been improved and the script can now handle more than 3
levels of directories for
a package.
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r20153 | bugman | 2013-06-16 17:30:23 +0200 (Sun, 16 Jun 2013) | 3 lines
The unit_test_runner.py script now defaults to verbose mode.
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r20154 | bugman | 2013-06-16 18:19:06 +0200 (Sun, 16 Jun 2013) | 3 lines
More cleanups of the unit_test_runner.py script.
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r20155 | bugman | 2013-06-16 18:20:32 +0200 (Sun, 16 Jun 2013) | 6 lines
Added a printout to the unit_test_runner.py if the TestCase class cannot be
found.
This normally continued the test loading silently without warning that the
TestCase class name is
missing or incorrect.
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r20156 | bugman | 2013-06-16 18:23:56 +0200 (Sun, 16 Jun 2013) | 6 lines
Fixes for the TestCase class names for a number of lib package modules.
As the test class name was incorrect, previously the test suite was
skipping these silently. This
was dangerous!
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r20157 | bugman | 2013-06-16 18:25:39 +0200 (Sun, 16 Jun 2013) | 3 lines
Missing import in the unit test module for the lib.frame_order.matrix_ops
module.
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r20158 | bugman | 2013-06-16 18:49:14 +0200 (Sun, 16 Jun 2013) | 3 lines
Import fixes for the
test_suite.unit_tests._lib._frame_order.test_matrix_ops module.
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r20159 | bugman | 2013-06-16 19:00:41 +0200 (Sun, 16 Jun 2013) | 6 lines
Fixes for the unit tests of the lib.selection module.
The contains_*() methods now should be used. And the
test_Selection_ful_spin_id() unit test has
been completely deleted as this way of checking the selection object is no
longer valid.
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r20160 | bugman | 2013-06-16 19:09:19 +0200 (Sun, 16 Jun 2013) | 6 lines
Shifted the spin_id_to_data_list() function from pipe_control.selection to
lib.selection.
This is because the selection object requires this function, and the
function has nothing to do with
the relax data store.
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r20161 | bugman | 2013-06-16 19:51:37 +0200 (Sun, 16 Jun 2013) | 3 lines
Lots of import cleanups including removal of '*' imports, missing imports,
and unused imports.
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r20162 | bugman | 2013-06-16 20:10:11 +0200 (Sun, 16 Jun 2013) | 3 lines
Small change to the find_unused_imports.py printouts.
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r20163 | bugman | 2013-06-16 21:18:45 +0200 (Sun, 16 Jun 2013) | 3 lines
Large removal of unused imports throughout relax found using the
devel_scripts/find_unused_imports.py script.
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r20164 | bugman | 2013-06-16 22:04:28 +0200 (Sun, 16 Jun 2013) | 6 lines
Clean up of all the imports in the relax code base.
This is mainly alphabetical reordering of the imports required due to the
huge layout changes in the
trunk.
........
Modified:
branches/relax_disp/ (props changed)
branches/relax_disp/devel_scripts/find_unused_imports.py
branches/relax_disp/extern/sobol/sobol_lib.py
branches/relax_disp/extern/sobol/sobol_test.py
branches/relax_disp/graphics/wizards/dipole_pair/NH_dipole_pair.py
branches/relax_disp/graphics/wizards/dipole_pair/VectorFieldPlot.py
branches/relax_disp/gui/__init__.py
branches/relax_disp/gui/about.py
branches/relax_disp/gui/analyses/__init__.py
branches/relax_disp/gui/analyses/auto_model_free.py
branches/relax_disp/gui/analyses/auto_r1.py
branches/relax_disp/gui/analyses/auto_r2.py
branches/relax_disp/gui/analyses/auto_rx_base.py
branches/relax_disp/gui/analyses/elements/model_list.py
branches/relax_disp/gui/analyses/wizard.py
branches/relax_disp/gui/components/base_list.py
branches/relax_disp/gui/components/citations.py
branches/relax_disp/gui/components/free_file_format.py
branches/relax_disp/gui/components/grid.py
branches/relax_disp/gui/components/molecule.py
branches/relax_disp/gui/components/relax_data.py
branches/relax_disp/gui/components/relax_data_meta.py
branches/relax_disp/gui/components/scripts.py
branches/relax_disp/gui/components/software.py
branches/relax_disp/gui/components/spectrum.py
branches/relax_disp/gui/controller.py
branches/relax_disp/gui/export_bmrb.py
branches/relax_disp/gui/filedialog.py
branches/relax_disp/gui/input_elements/bool.py
branches/relax_disp/gui/input_elements/combo_list.py
branches/relax_disp/gui/input_elements/dir.py
branches/relax_disp/gui/input_elements/file.py
branches/relax_disp/gui/input_elements/sequence.py
branches/relax_disp/gui/input_elements/sequence_2D.py
branches/relax_disp/gui/input_elements/spin_id.py
branches/relax_disp/gui/input_elements/value.py
branches/relax_disp/gui/interpreter.py
branches/relax_disp/gui/menu.py
branches/relax_disp/gui/message.py
branches/relax_disp/gui/misc.py
branches/relax_disp/gui/pipe_editor.py
branches/relax_disp/gui/relax_gui.py
branches/relax_disp/gui/relax_prompt.py
branches/relax_disp/gui/results_viewer.py
branches/relax_disp/gui/spin_viewer/containers.py
branches/relax_disp/gui/spin_viewer/frame.py
branches/relax_disp/gui/spin_viewer/splitter.py
branches/relax_disp/gui/spin_viewer/tree.py
branches/relax_disp/gui/uf_objects.py
branches/relax_disp/gui/wizards/peak_intensity.py
branches/relax_disp/gui/wizards/wiz_objects.py
branches/relax_disp/lib/io.py
branches/relax_disp/lib/selection.py
branches/relax_disp/lib/warnings.py
branches/relax_disp/multi/mpi4py_processor.py
branches/relax_disp/multi/multi_processor_base.py
branches/relax_disp/multi/result_commands.py
branches/relax_disp/multi/slave_commands.py
branches/relax_disp/pipe_control/align_tensor.py
branches/relax_disp/pipe_control/angles.py
branches/relax_disp/pipe_control/bmrb.py
branches/relax_disp/pipe_control/bruker.py
branches/relax_disp/pipe_control/dasha.py
branches/relax_disp/pipe_control/diffusion_tensor.py
branches/relax_disp/pipe_control/eliminate.py
branches/relax_disp/pipe_control/exp_info.py
branches/relax_disp/pipe_control/fix.py
branches/relax_disp/pipe_control/grace.py
branches/relax_disp/pipe_control/interatomic.py
branches/relax_disp/pipe_control/j_coupling.py
branches/relax_disp/pipe_control/minimise.py
branches/relax_disp/pipe_control/model_selection.py
branches/relax_disp/pipe_control/mol_res_spin.py
branches/relax_disp/pipe_control/molmol.py
branches/relax_disp/pipe_control/monte_carlo.py
branches/relax_disp/pipe_control/noesy.py
branches/relax_disp/pipe_control/opendx.py
branches/relax_disp/pipe_control/palmer.py
branches/relax_disp/pipe_control/paramag.py
branches/relax_disp/pipe_control/pcs.py
branches/relax_disp/pipe_control/pymol_control.py
branches/relax_disp/pipe_control/rdc.py
branches/relax_disp/pipe_control/relax_data.py
branches/relax_disp/pipe_control/results.py
branches/relax_disp/pipe_control/selection.py
branches/relax_disp/pipe_control/sequence.py
branches/relax_disp/pipe_control/spectrum.py
branches/relax_disp/pipe_control/state.py
branches/relax_disp/pipe_control/structure/geometric.py
branches/relax_disp/pipe_control/structure/main.py
branches/relax_disp/pipe_control/structure/mass.py
branches/relax_disp/pipe_control/value.py
branches/relax_disp/relax.py
branches/relax_disp/sample_scripts/model_free/final_data_extraction.py
branches/relax_disp/sample_scripts/n_state_model/local_min_search.py
branches/relax_disp/specific_analyses/api_common.py
branches/relax_disp/specific_analyses/consistency_tests/__init__.py
branches/relax_disp/specific_analyses/frame_order/__init__.py
branches/relax_disp/specific_analyses/hybrid.py
branches/relax_disp/specific_analyses/jw_mapping/__init__.py
branches/relax_disp/specific_analyses/model_free/__init__.py
branches/relax_disp/specific_analyses/model_free/bmrb.py
branches/relax_disp/specific_analyses/model_free/macro_base.py
branches/relax_disp/specific_analyses/model_free/main.py
branches/relax_disp/specific_analyses/model_free/mf_minimise.py
branches/relax_disp/specific_analyses/model_free/multi_processor_commands.py
branches/relax_disp/specific_analyses/model_free/results.py
branches/relax_disp/specific_analyses/n_state_model/parameters.py
branches/relax_disp/specific_analyses/noe/main.py
branches/relax_disp/specific_analyses/setup.py
branches/relax_disp/target_functions/frame_order.py
branches/relax_disp/target_functions/mf.py
branches/relax_disp/target_functions/n_state_model.py
branches/relax_disp/test_suite/gui_tests/base_classes.py
branches/relax_disp/test_suite/gui_tests/bmrb.py
branches/relax_disp/test_suite/gui_tests/bruker.py
branches/relax_disp/test_suite/gui_tests/consistency_tests.py
branches/relax_disp/test_suite/gui_tests/frame_order.py
branches/relax_disp/test_suite/gui_tests/jw_mapping.py
branches/relax_disp/test_suite/gui_tests/model_free.py
branches/relax_disp/test_suite/gui_tests/noe.py
branches/relax_disp/test_suite/gui_tests/pipes.py
branches/relax_disp/test_suite/gui_tests/rx.py
branches/relax_disp/test_suite/gui_tests/state.py
branches/relax_disp/test_suite/shared_data/align_data/CaM/generate_data.py
branches/relax_disp/test_suite/shared_data/align_data/CaM/pre_bleach.py
branches/relax_disp/test_suite/shared_data/align_data/monte_carlo_testing/generate_data.py
branches/relax_disp/test_suite/shared_data/diffusion_tensor/generate_data.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/free_rotor/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/free_rotor2/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/free_rotor_missing_data/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/generate_base.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/iso_cone/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/iso_cone_free_rotor/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/iso_cone_free_rotor2/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/frame_order_matrix.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/pseudo_ellipse/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/pseudo_ellipse/multi_processor_test.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/pseudo_ellipse2/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/pseudo_ellipse_free_rotor/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/pseudo_ellipse_free_rotor/generate_distribution.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/pseudo_ellipse_torsionless/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/rigid/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/rotate.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/rotor/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/rotor2/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/rotor2/pcs_only/frame_order.py
branches/relax_disp/test_suite/shared_data/frame_order/cam/rotor_2_state/frame_order.py
branches/relax_disp/test_suite/shared_data/model_free/back_calc.py
branches/relax_disp/test_suite/shared_data/saved_states/create_peak_heights_T2_ncyc1.py
branches/relax_disp/test_suite/system_tests/base_classes.py
branches/relax_disp/test_suite/system_tests/consistency_tests.py
branches/relax_disp/test_suite/system_tests/dasha.py
branches/relax_disp/test_suite/system_tests/diffusion_tensor.py
branches/relax_disp/test_suite/system_tests/frame_order.py
branches/relax_disp/test_suite/system_tests/generic.py
branches/relax_disp/test_suite/system_tests/jw_mapping.py
branches/relax_disp/test_suite/system_tests/load_spins.py
branches/relax_disp/test_suite/system_tests/model_free.py
branches/relax_disp/test_suite/system_tests/n_state_model.py
branches/relax_disp/test_suite/system_tests/scripts/1UBQ_relax_fit.py
branches/relax_disp/test_suite/system_tests/scripts/angles.py
branches/relax_disp/test_suite/system_tests/scripts/bug_20674_ct_analysis_failure.py
branches/relax_disp/test_suite/system_tests/scripts/bug_20674_jw_mapping.py
branches/relax_disp/test_suite/system_tests/scripts/consistency_tests.py
branches/relax_disp/test_suite/system_tests/scripts/curve_fitting/bug_18789_no_grace_errors.py
branches/relax_disp/test_suite/system_tests/scripts/dasha.py
branches/relax_disp/test_suite/system_tests/scripts/diff_tensor/ri_back_calc.py
branches/relax_disp/test_suite/system_tests/scripts/diff_tensor/tensor_opt.py
branches/relax_disp/test_suite/system_tests/scripts/frame_order/model_calcs/iso_cone_free_rotor.py
branches/relax_disp/test_suite/system_tests/scripts/frame_order/model_calcs/iso_cone_free_rotor_eigenframe.py
branches/relax_disp/test_suite/system_tests/scripts/frame_order/model_calcs/pseudo_ellipse_free_rotor.py
branches/relax_disp/test_suite/system_tests/scripts/frame_order/opt_rigid_rand_rot.py
branches/relax_disp/test_suite/system_tests/scripts/jw_mapping.py
branches/relax_disp/test_suite/system_tests/scripts/jw_mapping_calc_test.py
branches/relax_disp/test_suite/system_tests/scripts/load_spins_from_small_molecule.py
branches/relax_disp/test_suite/system_tests/scripts/local_tm_model_elimination.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/bug_14872_unicode_selection.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/bug_14941_local_tm_global_selection.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/bug_15050.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/bug_18790_negative_error.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/bugs_12582_12591_12607.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/create_m4.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/full_analysis_trunc.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/generate_ri.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/omp_model_free.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/opendx_s2_te_rex.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/opt_setup_S2_0_970_te_2048_Rex_0_149.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/opt_setup_local_tm_10_S2_0_8_te_40.py
branches/relax_disp/test_suite/system_tests/scripts/model_free/tylers_peptide.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/align_fit.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/data_copying.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/lactose_n_state.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/metal_pos_opt.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/monte_carlo_testing.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/paramag_align_fit.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/paramag_centre_fit.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/phthalic_acid_noes.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/populations.py
branches/relax_disp/test_suite/system_tests/scripts/n_state_model/stereochem_analysis.py
branches/relax_disp/test_suite/system_tests/scripts/noe.py
branches/relax_disp/test_suite/system_tests/scripts/palmer.py
branches/relax_disp/test_suite/system_tests/scripts/palmer_omp.py
branches/relax_disp/test_suite/system_tests/scripts/peak_lists/ccpn_analysis.py
branches/relax_disp/test_suite/system_tests/scripts/relax_fit.py
branches/relax_disp/test_suite/system_tests/scripts/xh_vector_dist.py
branches/relax_disp/test_suite/system_tests/state.py
branches/relax_disp/test_suite/system_tests/unit_vectors.py
branches/relax_disp/test_suite/unit_tests/_lib/__init__.py
branches/relax_disp/test_suite/unit_tests/_lib/_frame_order/test_matrix_ops.py
branches/relax_disp/test_suite/unit_tests/_lib/_geometry/test_lines.py
branches/relax_disp/test_suite/unit_tests/_lib/_geometry/test_pec.py
branches/relax_disp/test_suite/unit_tests/_lib/_geometry/test_rotations.py
branches/relax_disp/test_suite/unit_tests/_lib/_linear_algebra/test_kronecker_product.py
branches/relax_disp/test_suite/unit_tests/_lib/_software/test_sparky.py
branches/relax_disp/test_suite/unit_tests/_lib/test_float.py
branches/relax_disp/test_suite/unit_tests/_lib/test_io.py
branches/relax_disp/test_suite/unit_tests/_lib/test_selection.py
branches/relax_disp/test_suite/unit_tests/_pipe_control/_structure/test_internal.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_minimisation.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_molmol.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_n_state_model.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_pymol.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_relax_data.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_spectrum.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_spin.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_structure.py
branches/relax_disp/test_suite/unit_tests/_prompt/test_value.py
branches/relax_disp/test_suite/unit_tests/_specific_analyses/_model_free/test_main.py
branches/relax_disp/test_suite/unit_tests/_target_functions/test_chi2.py
branches/relax_disp/test_suite/unit_tests/relax_data_testing_base.py
branches/relax_disp/test_suite/unit_tests/sequence_testing_base.py
branches/relax_disp/test_suite/unit_tests/unit_test_runner.py
branches/relax_disp/user_functions/bruker.py
branches/relax_disp/user_functions/consistency_tests.py
branches/relax_disp/user_functions/deselect.py
branches/relax_disp/user_functions/diffusion_tensor.py
branches/relax_disp/user_functions/dx.py
branches/relax_disp/user_functions/eliminate.py
branches/relax_disp/user_functions/fix.py
branches/relax_disp/user_functions/frame_order.py
branches/relax_disp/user_functions/grace.py
branches/relax_disp/user_functions/interatom.py
branches/relax_disp/user_functions/j_coupling.py
branches/relax_disp/user_functions/minimisation.py
branches/relax_disp/user_functions/model_selection.py
branches/relax_disp/user_functions/molecule.py
branches/relax_disp/user_functions/molmol.py
branches/relax_disp/user_functions/monte_carlo.py
branches/relax_disp/user_functions/n_state_model.py
branches/relax_disp/user_functions/noe.py
branches/relax_disp/user_functions/palmer.py
branches/relax_disp/user_functions/paramag.py
[... 814 lines stripped ...]
r20165 - in /branches/relax_disp: ./ devel_scripts/ extern/sobol/ graphics/wizards/dipole_pair/ gui/ gui/analyses/ gui/analy...