Author: bugman Date: Thu Jun 20 00:19:45 2013 New Revision: 20223 URL: http://svn.gna.org/viewcvs/relax?rev=20223&view=rev Log: The NMRPipe script in the relaxation curve-fitting chapter of the manual now uses lstlisting. The language has been explicitly set to csh to override the global default of Python. Modified: trunk/docs/latex/curvefit.tex Modified: trunk/docs/latex/curvefit.tex URL: http://svn.gna.org/viewcvs/relax/trunk/docs/latex/curvefit.tex?rev=20223&r1=20222&r2=20223&view=diff ============================================================================== --- trunk/docs/latex/curvefit.tex (original) +++ trunk/docs/latex/curvefit.tex Thu Jun 20 00:19:45 2013 @@ -85,32 +85,32 @@ Here is an example NMRPipe script designed for optimal relaxation rate extraction: -\begin{exampleenv} -\#!/bin/csh \\ - \\ -setenv FILEROOT \$1 \\ -set PHASE=81.4 \\ - \\ -echo "\textbackslash n\# Fourier Transform (nmrPipe fid/*.fid to ft/*.dat)" \\ -echo "\# t2 phase is set to \$PHASE" \\ -echo "\# t1 phase is set to 0.0\textbackslash n" \\ - \\ -nmrPipe -in fid/\$FILEROOT.fid \ \\ -| nmrPipe -fn SOL \ \\ -| nmrPipe -fn GM -g1 15 -g2 20 -c 0.5 \ \\ -| nmrPipe -fn ZF -size 8192 \ \\ -| nmrPipe -fn FT -auto \ \\ -| nmrPipe -fn PS -p0 \$PHASE -p1 0.0 -di -verb \ \\ -| nmrPipe -fn EXT -left -sw \ \\ -| nmrPipe -fn TP \ \\ -| nmrPipe -fn SP -off 0.5 -end 0.98 -pow 2 -c 0.5 \ \\ -| nmrPipe -fn ZF -size 8192 \ \\ -| nmrPipe -fn FT -auto \ \\ -| nmrPipe -fn PS -p0 0.0 -p1 0.0 -di -verb \ \\ -| nmrPipe -fn REV \ \\ -| nmrPipe -fn TP \ \\ -| nmrPipe -out ft/\$FILEROOT.dat -ov -\end{exampleenv} +\begin{lstlisting}[language=csh] +#!/bin/csh + +setenv FILEROOT $1 +set PHASE=81.4 + +echo "\n# Fourier Transform (nmrPipe fid/*.fid to ft/*.dat)" +echo "# t2 phase is set to $PHASE" +echo "# t1 phase is set to 0.0\n" + +nmrPipe -in fid/$FILEROOT.fid \ +| nmrPipe -fn SOL \ +| nmrPipe -fn GM -g1 15 -g2 20 -c 0.5 \ +| nmrPipe -fn ZF -size 8192 \ +| nmrPipe -fn FT -auto \ +| nmrPipe -fn PS -p0 $PHASE -p1 0.0 -di -verb \ +| nmrPipe -fn EXT -left -sw \ +| nmrPipe -fn TP \ +| nmrPipe -fn SP -off 0.5 -end 0.98 -pow 2 -c 0.5 \ +| nmrPipe -fn ZF -size 8192 \ +| nmrPipe -fn FT -auto \ +| nmrPipe -fn PS -p0 0.0 -p1 0.0 -di -verb \ +| nmrPipe -fn REV \ +| nmrPipe -fn TP \ +| nmrPipe -out ft/$FILEROOT.dat -ov +\end{lstlisting} % Measuring peak intensities.