r20248 - /trunk/test_suite/system_tests/peak_lists.py -- June 21, 2013 - 18:23

Author: bugman
Date: Fri Jun 21 18:23:24 2013
New Revision: 20248

URL: http://svn.gna.org/viewcvs/relax?rev=20248&view=rev
Log:
Test function for NMRPipe SeriesTab format implemented.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for 
NMRPipe seriesTab format
*.ser.

An assertEqual test is implemented for the reading of NMRPipe SeriesTab 
format.  The standalone call
is: relax -s Peak_lists.test_read_peak_list_NMRPipe_seriesTab 


Modified:
    trunk/test_suite/system_tests/peak_lists.py

Modified: trunk/test_suite/system_tests/peak_lists.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/peak_lists.py?rev=20248&r1=20247&r2=20248&view=diff
==============================================================================
--- trunk/test_suite/system_tests/peak_lists.py (original)
+++ trunk/test_suite/system_tests/peak_lists.py Fri Jun 21 18:23:24 2013
@@ -2,6 +2,7 @@
 #                                                                            
 #
 # Copyright (C) 2008-2013 Edward d'Auvergne                                  
 #
 # Copyright (C) 2008 Sebastien Morin                                         
 #
+# Copyright (C) 2013 Troels E. Linnet                                        
 #
 #                                                                            
 #
 # This file is part of the program relax (http://www.nmr-relax.com).         
 #
 #                                                                            
 #
@@ -199,6 +200,26 @@
         # Test the data.
         
self.assertEqual(list(cdp.mol[0].res[0].spin[0].intensities.values())[0], 
-0.1694)
         
self.assertEqual(list(cdp.mol[0].res[1].spin[0].intensities.values())[0], 
-0.1142)
+
+
+    def test_read_peak_list_NMRPipe_seriesTab(self):
+        """Test the reading of an NMRPipe seriesTab peak list."""
+
+        # Create the sequence data, and name the spins.
+        self.interpreter.residue.create(62)
+        self.interpreter.spin.name(name='NE1')
+        self.interpreter.residue.create(10)
+        self.interpreter.residue.create(6)
+        self.interpreter.spin.name(name='N', spin_id=1)
+        self.interpreter.spin.name(name='N', spin_id=1)
+
+        # Read the peak list.
+        self.interpreter.spectrum.read_intensities(file="seriesTab.ser", 
dir=status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'peak_lists', spectrum_id='test', 
int_method='height')
+
+        # Test the data.
+        
self.assertEqual(list(cdp.mol[0].res[0].spin[0].intensities['test']), 
+1.851056e+06)
+        
self.assertEqual(list(cdp.mol[0].res[1].spin[1].intensities['test']), 
+3.224387e+05)
+        
self.assertEqual(list(cdp.mol[0].res[2].spin[1].intensities['test']), 
+1.479366e+06)
 
 
     def test_read_peak_list_sparky(self):