mailr20277 - /branches/relax_disp/user_functions/relax_disp.py


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Posted by edward on July 12, 2013 - 11:16:
Author: bugman
Date: Fri Jul 12 11:16:00 2013
New Revision: 20277

URL: http://svn.gna.org/viewcvs/relax?rev=20277&view=rev
Log:
Added the 'NS 2-site star' model to the relax_disp.select_model user function 
frontend.

This is the model of the numerical solution for the 2-site Bloch-McConnell 
equations using complex
conjugate matrices.

This commit follows step 2 of the relaxation dispersion model addition 
tutorial
(http://thread.gmane.org/gmane.science.nmr.relax.devel/3907).


Modified:
    branches/relax_disp/user_functions/relax_disp.py

Modified: branches/relax_disp/user_functions/relax_disp.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/relax_disp/user_functions/relax_disp.py?rev=20277&r1=20276&r2=20277&view=diff
==============================================================================
--- branches/relax_disp/user_functions/relax_disp.py (original)
+++ branches/relax_disp/user_functions/relax_disp.py Fri Jul 12 11:16:00 2013
@@ -39,7 +39,7 @@
 from specific_analyses.relax_disp.disp_data import cpmg_frq, 
plot_disp_curves, plot_exp_curves, relax_time, spin_lock_field
 from specific_analyses.relax_disp.nessy import nessy_input
 from specific_analyses.relax_disp.sherekhan import sherekhan_input
-from specific_analyses.relax_disp.variables import MODEL_CR72, MODEL_DPL94, 
MODEL_IT99, MODEL_LM63, MODEL_M61, MODEL_M61B, MODEL_NOREX, MODEL_R2EFF
+from specific_analyses.relax_disp.variables import MODEL_CR72, MODEL_DPL94, 
MODEL_IT99, MODEL_LM63, MODEL_M61, MODEL_M61B, MODEL_NOREX, MODEL_R2EFF, 
MODEL_NS_2SITE_STAR
 from specific_analyses.setup import relax_disp_obj
 from user_functions.data import Uf_info; uf_info = Uf_info()
 from user_functions.objects import Desc_container
@@ -442,6 +442,7 @@
         "%s: {R20, ..., phi_ex, kex}" % MODEL_LM63,
         "%s: {R20, ..., pA, dw, kex}" % MODEL_CR72,
         "%s: {R20, ..., phi_ex, padw2, kex}" % MODEL_IT99,
+        "%s: {R20A, R20B, ..., pA, dw, kex}" % MODEL_NS_2SITE_STAR,
         "%s: {R1rho', ..., phi_ex, kex}" % MODEL_M61,
         "%s: {R1rho', ..., phi_ex, kex}" % MODEL_DPL94,
         "%s: {R1rho', ..., pA, dw, kex}" % MODEL_M61B
@@ -452,6 +453,7 @@
         MODEL_LM63,
         MODEL_CR72,
         MODEL_IT99,
+        MODEL_NS_2SITE_STAR,
         MODEL_M61,
         MODEL_DPL94,
         MODEL_M61B
@@ -466,6 +468,7 @@
 uf.desc[-1].add_item_list_element("'%s'" % MODEL_LM63, "The original Luz and 
Meiboom (1963) 2-site fast exchange equation with parameters {R20, ..., 
phi_ex, kex},")
 uf.desc[-1].add_item_list_element("'%s'" % MODEL_CR72, "The Carver and 
Richards (1972) 2-site equation for all time scales with parameters {R20, 
..., pA, dw, kex}.")
 uf.desc[-1].add_item_list_element("'%s'" % MODEL_IT99, "The Ishima and 
Torchia (1999) 2-site model for all time scales with pA >> pB and with 
parameters {R20, ..., phi_ex, padw2, kex}.")
+uf.desc[-1].add_item_list_element("'%s'" % MODEL_NS_2SITE_STAR, "The 
numerical solution for the 2-site Bloch-McConnell equations using complex 
conjugate matrices with parameters {R20A, R20B, ..., pA, dw, kex}.")
 uf.desc[-1].add_paragraph("For the R1rho-type experiment, the currently 
supported models are:")
 uf.desc[-1].add_item_list_element("'%s'" % MODEL_R2EFF, "This is the same 
model model as for the CPMG-type experiments except that the R1rho and not 
R2eff values are determined.")
 uf.desc[-1].add_item_list_element("'%s'" % MODEL_NOREX, "This is the model 
for no chemical exchange being present,")




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