Author: bugman
Date: Wed Nov 6 14:03:43 2013
New Revision: 21392
URL: http://svn.gna.org/viewcvs/relax?rev=21392&view=rev
Log:
Added more R1rho model references to the bibliography file for the manual.
This includes the Trott and Palmer 2004 N-site and the Miloushev and Palmer
2005 2-site models. The
Trott and Palmer 2002 R1rho model reference has been expanded to include all
details.
Modified:
branches/relax_disp/docs/latex/bibliography.bib
Modified: branches/relax_disp/docs/latex/bibliography.bib
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/docs/latex/bibliography.bib?rev=21392&r1=21391&r2=21392&view=diff
==============================================================================
--- branches/relax_disp/docs/latex/bibliography.bib (original)
+++ branches/relax_disp/docs/latex/bibliography.bib Wed Nov 6 14:03:43 2013
@@ -4895,6 +4895,70 @@
year = 2000
}
+@Article{MiloushevPalmer05,
+ Author = {Miloushev, V. Z. and Palmer, 3rd, A. G.},
+ Title = {R(1rho) relaxation for two-site chemical exchange:
+ general approximations and some exact solutions.},
+ Journal = jmr,
+ Volume = {177},
+ Number = {2},
+ Pages = {221-7},
+ abstract = {Analytic expressions for the nuclear magnetic spin
+ relaxation rate constant for magnetization spin-locked
+ in the rotating reference frame under an applied
+ radiofrequency field, R(1rho), are obtained for
+ two-site chemical exchange. The theoretical approach is
+ motivated by Laguerre's method and obtains R(1rho) as
+ the root of a (p1,q1) Pade approximant. The general
+ formula for R(1rho) obtained by this approach is
+ substantially simpler than existing expressions and is
+ equally or slightly more accurate, in most cases. In
+ addition, particular solutions for the R(1rho) rate
+ constant are presented for two special cases: equal
+ populations of the two exchanging sites, or placement
+ of the radiofrequency carrier at the average resonance
+ frequency of the two sites. The solutions are exact
+ when the R1 and R2 relaxation rate constants are
+ identical, and nearly exact under realistic
+ experimental conditions.},
+ authoraddress = {Department of Biochemistry and Molecular Biophysics,
+ Columbia University, 630 West 168th Street, New York,
+ NY 10032, USA.},
+ keywords = {*Models, Chemical ; Nuclear Magnetic Resonance,
+ Biomolecular/*methods ; Proteins/chemistry},
+ language = {eng},
+ medline-aid = {S1090-7807(05)00249-1 [pii] ;
+ 10.1016/j.jmr.2005.07.023 [doi]},
+ medline-crdt = {2005/09/07 09:00},
+ medline-da = {20051128},
+ medline-dcom = {20060228},
+ medline-dep = {20050906},
+ medline-edat = {2005/09/07 09:00},
+ medline-fau = {Miloushev, Vesselin Z ; Palmer, Arthur G 3rd},
+ medline-gr = {GM07367/GM/NIGMS NIH HHS/United States ;
+ GM59273/GM/NIGMS NIH HHS/United States},
+ medline-is = {1090-7807 (Print) ; 1090-7807 (Linking)},
+ medline-jid = {9707935},
+ medline-jt = {Journal of magnetic resonance (San Diego, Calif. :
+ 1997)},
+ medline-lr = {20071114},
+ medline-mhda = {2006/03/01 09:00},
+ medline-own = {NLM},
+ medline-phst = {2005/04/29 [received] ; 2005/06/21 [revised] ;
+ 2005/07/28 [accepted] ; 2005/09/06 [aheadofprint]},
+ medline-pl = {United States},
+ medline-pmid = {16143548},
+ medline-pst = {ppublish},
+ medline-pt = {Journal Article ; Research Support, N.I.H., Extramural},
+ medline-rn = {0 (Proteins)},
+ medline-sb = {IM},
+ medline-so = {J Magn Reson. 2005 Dec;177(2):221-7. Epub 2005 Sep 6.},
+ medline-stat = {MEDLINE},
+ url =
{http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=16143548},
+ doi = {10.1016/j.jmr.2005.07.023},
+ year = 2005
+}
+
@Article{MoreThuente94,
Author = {Mor{\'e}, J. J. and Thuente, D. J.},
Title = {Line search algorithms with guaranteed sufficient
@@ -6754,15 +6818,117 @@
}
@Article{TrottPalmer02,
- pmid = {11820837},
- author = {Trott, O. and Palmer, A. G.},
- title = {R1rho relaxation outside of the fast-exchange limit.},
- journal = jmr,
- volume = {154},
- number = {1},
- pages = {157-160},
- year = {2002},
- doi = {10.1006/jmre.2001.2466},
+ Author = {Trott, O. and Palmer, 3rd, A. G.},
+ Title = {R1rho relaxation outside of the fast-exchange limit.},
+ Journal = jmr,
+ Volume = {154},
+ Number = {1},
+ Pages = {157-60},
+ abstract = {Chemical-exchange effects in NMR spectroscopy enable
+ kinetic processes to be characterized at equilibrium in
+ solution. Beginning with the Bloch-McConnell equations,
+ new expressions are derived for the spin relaxation
+ rate constant in the rotating frame, R1rho, for
+ chemical exchange between two sites that have distinct
+ magnetic environments and Larmor frequencies. The
+ results are accurate provided that the spin relaxation
+ decay is dominated by a single exponential damping
+ constant and are applicable to a wider range of
+ conditions than existing theoretical descriptions. The
+ new expressions for R1rho will be particularly useful
+ in analyzing experimental data when exchange is not
+ fast and site populations are unequal.},
+ authoraddress = {Department of Biochemistry and Molecular Biophysics,
+ Columbia University, 630 West 168th Street, New York,
+ New York 10032, USA.},
+ keywords = {*Magnetic Resonance Spectroscopy ; Mathematics ;
+ Models, Theoretical ; Solutions},
+ language = {eng},
+ medline-aid = {10.1006/jmre.2001.2466 [doi] ; S1090780701924668 [pii]},
+ medline-crdt = {2002/02/01 10:00},
+ medline-da = {20020131},
+ medline-dcom = {20020503},
+ medline-edat = {2002/02/01 10:00},
+ medline-fau = {Trott, Oleg ; Palmer, Arthur G 3rd},
+ medline-gr = {GM59273/GM/NIGMS NIH HHS/United States},
+ medline-is = {1090-7807 (Print) ; 1090-7807 (Linking)},
+ medline-jid = {9707935},
+ medline-jt = {Journal of magnetic resonance (San Diego, Calif. :
+ 1997)},
+ medline-lr = {20071114},
+ medline-mhda = {2002/05/04 10:01},
+ medline-own = {NLM},
+ medline-pl = {United States},
+ medline-pmid = {11820837},
+ medline-pst = {ppublish},
+ medline-pt = {Journal Article ; Research Support, U.S. Gov't, P.H.S.},
+ medline-rn = {0 (Solutions)},
+ medline-sb = {IM},
+ medline-so = {J Magn Reson. 2002 Jan;154(1):157-60.},
+ medline-stat = {MEDLINE},
+ url =
{http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=11820837},
+ doi = {10.1006/jmre.2001.2466},
+ year = 2002
+}
+
+@Article{TrottPalmer04,
+ Author = {Trott, O. and Palmer, 3rd, A. G.},
+ Title = {Theoretical study of {R}(1rho) rotating-frame and {R}2
+ free-precession relaxation in the presence of n-site
+ chemical exchange.},
+ Journal = jmr,
+ Volume = {170},
+ Number = {1},
+ Pages = {104-12},
+ abstract = {The n-site Bloch-McConnell equations describe the
+ evolution of nuclear spin magnetization in the
+ laboratory or rotating frames of reference for
+ molecules subject to chemical or conformational
+ interconversions between n species with distinct NMR
+ chemical shifts. Perturbation theory is used to
+ approximate the largest eigenvalue of the
+ Bloch-McConnell equations and obtain analytical
+ expressions for the rotating-frame relaxation rate
+ constant and for the laboratory frame resonance
+ frequency and transverse relaxation rate constant. The
+ perturbation treatment is valid whenever the population
+ of one site is dominant. The new results are generally
+ applicable to investigations of kinetic processes by
+ NMR spectroscopy.},
+ authoraddress = {Department of Biochemistry and Molecular Biophysics,
+ Columbia University, 630 West 168th Street, New York,
+ NY 10032, USA.},
+ keywords = {*Models, Chemical ; Nuclear Magnetic Resonance,
+ Biomolecular/*methods ; Proteins/chemistry},
+ language = {eng},
+ medline-aid = {10.1016/j.jmr.2004.06.005 [doi] ; S1090780704001752
+ [pii]},
+ medline-crdt = {2004/08/25 05:00},
+ medline-da = {20040824},
+ medline-dcom = {20041021},
+ medline-edat = {2004/08/25 05:00},
+ medline-fau = {Trott, Oleg ; Palmer, Arthur G 3rd},
+ medline-gr = {GM59273/GM/NIGMS NIH HHS/United States ; T32
+ DK07328/DK/NIDDK NIH HHS/United States},
+ medline-is = {1090-7807 (Print) ; 1090-7807 (Linking)},
+ medline-jid = {9707935},
+ medline-jt = {Journal of magnetic resonance (San Diego, Calif. :
+ 1997)},
+ medline-lr = {20071114},
+ medline-mhda = {2004/10/22 09:00},
+ medline-own = {NLM},
+ medline-phst = {2004/03/13 [received] ; 2004/06/10 [revised]},
+ medline-pl = {United States},
+ medline-pmid = {15324763},
+ medline-pst = {ppublish},
+ medline-pt = {Journal Article ; Research Support, U.S. Gov't, P.H.S.},
+ medline-rn = {0 (Proteins)},
+ medline-sb = {IM},
+ medline-so = {J Magn Reson. 2004 Sep;170(1):104-12.},
+ medline-stat = {MEDLINE},
+ url =
{http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=15324763},
+ doi = {10.1016/j.jmr.2004.06.005},
+ year = 2004
}
@Article{Tsan00,
r21392 - /branches/relax_disp/docs/latex/bibliography.bib